1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGCAGATAAAAGTACCAAAAAATTGGCAAAGAAAGAAAAATTGGCCAAGAAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcatctctatgtttgatggtgaattttgagaaacatgtattttctaaatgatgcgatctaatttgaagatctctcaacttttcttccatgtaaatgctgcag
species | Vitis vinifera |
transcript | Vv13s0067g00640.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCT AGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGTEST: gi|30322202|gb|CD005464.1|CD005464
genomic: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcat ... aatgctgcagAGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGT
EST: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCT AGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGTEST: gi|30321357|gb|CD004619.1|CD004619
genomic: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcat ... aatgctgcagAGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGT
EST: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCT AGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGTEST: gi|71886424|gb|DT035479.1|DT035479
genomic: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcat ... aatgctgcagAGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGT
EST: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCT AGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGTEST: gi|30253179|gb|CB970730.1|CB970730
genomic: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcat ... aatgctgcagAGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGT
EST: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCT AGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGT
genomic: AAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcat ... aatgctgcagAGAAGAGTTCAGGAAGGTATACAAACAAGAGCATCCCAATGTGAAGGCTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCAGATAAAAGTACCAAAAAATTGGCAAAGAAAGAAAAATTGGCCAAGAAGGACCCTAACAAGCCAAAGAGGCCTCCTAGTGCTTTCTTTGTGTTTCTgtaagttcatctctatgtttgatggtgaattttgagaaacatgtattttctaaatgatgcgatctaatttgaagatctctcaacttttcttccatgtaaatgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG