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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGACAGGAGAGGTTTGGAACATTGACAAACTCTTATTATAGAGGTGCACATGGCATTATTCTAGgtatgtcatagcatattctaaccttttcttcttgttcttgttcttgttcttgttcttcttcttctttttcttccttttatagattggctcactacataag...

Basic information

species Vitis vinifera
transcript Vv13s0019g05190.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g05190.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G34120.1 (Glycine max), 5'ss of exon 3
CTGGACAGGAGAGGTTTGGAACATTGACAAACTCTTATTATAGAGGTGCACATGGCATTATTCTAGgtatgtcata---------gcatattctaaccttttcttcttgttcttgttcttgttcttgttcttcttcttctttttcttccttttatagattggctcactacataag
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CTGGACAAGAGAGGTTTGGAACAGTAATAAGTTCTTATTATAGAGGCGCACATGGAATCATTCTTGgtattctatctatctatctatatatgaaaaatgaatttatttagttttgtatatactaaggtttatgacatttaaatatgtatttttatgaa--ggtttatt-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965217|gb|GW838904.1|GW838904
EST:     TGGAACATTGACAAACTCTTATTATAGAGGTGCGCATGGCATAATTCTAG                         TTTATGATGTAACAA
genomic: TGGAACATTGACAAACTCTTATTATAGAGGTGCACATGGCATTATTCTAGgtatgtcata ... ttcattttagTTTATGATGTAACAA