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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattcctaattttcctttcataccattattttggattacatccttaatttgatcagtagcaaataaccctcttcaggcagcacaaatattttgcattt...

Basic information

species Vitis vinifera
transcript Vv13s0019g04870.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351018804|gb|FQ425706.1|FQ425706
EST:     TCCACCTGCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: TCCACCTGCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|18458839|gb|BM437117.1|BM437117
EST:     GAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: GAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|28959731|gb|CB339866.1|CB339866
EST:     GCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGTAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|26266690|gb|CA817753.1|CA817753
EST:     GCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|83276380|gb|DV940388.1|DV940388
EST:     AGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTCTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: AGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|110705270|gb|EE081963.1|EE081963
EST:     CTGCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: CTGCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|110730482|gb|EE107614.1|EE107614
EST:     GCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAA
genomic: GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|26258614|gb|CA809677.1|CA809677
EST:     GCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|110733026|gb|EE108825.1|EE108825
EST:     GCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
EST: gi|87584159|gb|DY473422.1|DY473422
EST:     GCCTTATTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAG                         ATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG
genomic: GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattccta ... cttagtgcagATACGGCAGCTTTTGAAAGAGTTGGATGGTGAATTCCTTCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCTTGTTGCTCTTGGGCTTTGAAGTGGAGGAGGAAGTGAAGgtaattcctaattttcctttcataccattattttggattacatccttaatttgatcagtagcaaataaccctcttcaggcagcacaaatattttgcattt

- - - - - - - - -  TTGAAG
- - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - GTGGAG
- - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaaa