Sequence
atgc intronic sequence ATGC exonic sequenceAGACTGGATTGAGGAACTTCAAGCTCAGCCATGGTCCAATGCGAAGAAATCAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAGgtatgttctgtgcaccttcctgttactgcctttcttgcatttttatgaaccattaaatcattatatattggaagttcatgcatttttatgcaattgttga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G09360.1 (Glycine max), 5'ss of exon 3
AGACTGGATTGAGGAACTTCAAGCTCAGCCATGGTCCAATGCGAAGAAATCAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAGgtatgttctgtgcaccttcctgttactgcctttcttgcatttttatgaaccattaaatcattatatattggaagttcatgcatttttatgcaattgttga--
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AAAGTGGATTGAGGAACTTCAGATTCAACCCTGGTCTAAAACTGTGAAATCTAATGATCAGCCTGCTTTTAACTGGGCTTTAATGAAGAATGCTAAAGAGgtttgttaaattttcatgcttccttccagtctatata-acttttgtagactaattatac-tgatatatgagaggagcttgtttggatagtcaattatgatct
upper sequence: Vv13s0019g04760.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G01220.1 (Arabidopsis thaliana), 5'ss of exon 3
AGACTGGATTGAGGAACTTCAAGCTCAGCCATGGTCCAATGCGAAGAAATCAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAGgtatgttctgtgcaccttcctgttactgcctttcttgcatttttatgaaccattaaatcattatatattggaagttcatgcatt-tttatgcaattgttga-
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GAAATGGATCGAGGAGCTTGAAACGCAACCTTGGTCCAGAGCTAAGAAAGCAAATGATCAGCCTGGTTTTAACTGGGCACTTAACAAAACAGCTAATCAGgtatgttctttcttcctagtt-ccacagtaaaacagtaacttctcttctctgt-aaattggtctcaataagtagttactacacaattggtgaattcaatgaaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110729936|gb|EE106444.1|EE106444EST: CAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAG GTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATAC
genomic: CAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAGgtatgttctg ... tttgctacagGTGGATCTCTACCTGCTTCCCCAGGTAGCATTTCCTACAGGAGGATTATAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGACTGGATTGAGGAACTTCAAGCTCAGCCATGGTCCAATGCGAAGAAATCAAATGATCAGCCTGCCTTTAACTGGGCACTAAACAGAACTGCAGCACAGgtatgttctgtgcaccttcctgttactgcctttcttgcatttttatgaaccattaaatcattatatattggaagttcatgcatttttatgcaattgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG