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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g04680.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g05740.1 (Oryza sativa), 5'ss of exon 3
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaatt--ctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag
 |||| ||| | || || |||||||| || ||||| || ||||||||||| ||||||||||| |||||||| || || |||||||| |  | | |    ||     || | |  | ||   || || || ||| | ||   |  || |   |  || |   |  ||   ||||   ||    | ||  |   |||  | |||                                                                 
TTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGgtgattactgttttgagtctcttagtttcagttgataatgttattcttcaccttagatgcatgattcttactttcagaagttcgattgttttaa-acttatttcctcaaataatttcag----------------------------------------------------------------

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g30520.1 (Oryza sativa), 5'ss of exon 3
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgat-------------gcacattttttt-tttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag
 |||| ||| | || ||||| |||||||| ||||| || ||||||||||| ||||| ||||| ||||||||||| || || ||||| | | | | || |   ||| | |||   | |              ||||   |||  ||  || | || |||     ||||| |||    ||||||| |   |||| || ||||                                                                               
TTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGgtgaaacagacacttgattattttttacaggtttcctgtacagaggacacaccatttgattctccctataatatggcttattctattctgt-ttgttttat-taaatgaat-ttag-------------------------------------------------------------------------------

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G362088_T02 (Zea mays), 5'ss of exon 4
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatat-attatgtgatgcacattttttttttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag
 |||| ||| |||| || || |||||||| ||||| || ||||||||||||||||||||||| |||||||| ||||| |||||||| |   |      |    | ||       |||     |  |||  ||||  ||  |  || |  | | |    | | ||| | || | | ||||| |                                                                                    
TTGGTATTGCTGGGAGACTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGTTTTGTTCGTGGTCAGTTTGATCCTACTTCCAAGgtgatttactgttttgatcagatcgacccatga-atgaaactttactttcggttgcagcatttccattcc----ccaacttatcttct-caaatggttacag--------------------------------------------------------------------------------

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G35230.3 (Glycine max), 5'ss of exon 3
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag
|| ||| | || || |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||||              ||||| |||| |  | |   |||| |||||   ||||| | ||    ||| | || ||  | ||||    | ||   || ||  | ||     |   |||  ||           ||||| ||||  |  | | |||| ||   ||   |||  |||  | ||
CTTGTTCTCTTAGGTGATTCTGGTGTTGGTAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaaa-------------tatatgttatttagtac---ttttatttttattttttaatgta----attttttttaatatagtttatgacaaaaaaatattgtcgtc----ttgatatgttaa-----------ttattccatgg-aattgttcttatatgttttagactttgtaatgtaag

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G32320.1 (Glycine max), 5'ss of exon 3
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaattctgttcaaccttgttttgtgccaatggatgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag
|| ||| | || || |||||||||||||| ||||||||||||||||| || ||||||||||| |||||||| || ||||| |||||||   |||||  | |||                  | |||| ||||   ||||| ||||    ||| |  | ||  | ||||  ||  | |  || ||        || | | |||  ||           ||||| ||||  | |||| |||| ||   ||   ||   |||  | ||
CTTGTTCTCTTAGGTGATTCTGGTGTTGGCAAAAGCTGTATTGTTCTACGATTTGTTCGTGGTCAGTTTGATCCAACATCTAAGgtaa---atatatgttgcttcg-------------gtacttttattttattttttaatata----atttttcttaatatggttt-atgata-taaatttt-----ttgtctttttatgttaa-----------ttattccatgg-aaattttcttatatgttttagactctgtaatgtaag

upper sequence: Vv13s0019g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G54840.2 (Arabidopsis thaliana), 5'ss of exon 3
CTGGTTTTGTTGGGGGATTCTGGTGTTGGAAAAAGCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaatatacatagctatatattatgtgatgcacattttttttttcccttttattatattaaattctgtt-caaccttgttttgtgccaatgga-tgttagcatcaatcctctcatgcaaaatacatggatgttatttcatgatagatttacttagattggttgatcttaataacttcag
 | ||| | || || || ||||||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||| ||||||| |||||||| ||    | | | ||| || |      |    |   | |    || |||||  | |  |   |||| |   |     | ||   | | | || | |    |||   |     ||   ||    |       | | |||                                        
TTAGTTCTATTAGGAGACTCTGGTGTTGGTAAAAGTTGTATTGTCCTTCGATTTGTACGTGGTCAGTTTGACGCTACATCTAAGgtaagtaaag--ccttgttatctaattgtctttattgaccatctgacacctttttagaacaccatgctctgatgtgagtgaatattagactattagagtatacttatctgccactagatctcaagactactagctatgtatcag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294963923|gb|GW836798.1|GW836798
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351049141|gb|FQ449863.1|FQ449863
EST:     GCTGTATTGTTCTTCGTTTTGTACGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351031329|gb|FQ445354.1|FQ445354
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|110378503|gb|EC943640.1|EC943640
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|110386522|gb|EC951122.1|EC951122
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|110707796|gb|EE084605.1|EE084605
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351029650|gb|FQ427490.1|FQ427490
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351031354|gb|FQ445379.1|FQ445379
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351036602|gb|FQ457315.1|FQ457315
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|110390981|gb|EC955931.1|EC955931
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351033397|gb|FQ462048.1|FQ462048
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|30302011|gb|CB978805.1|CB978805
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|349830843|gb|FQ418151.1|FQ418151
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|110428129|gb|EC994591.1|EC994591
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|351016862|gb|FQ424289.1|FQ424289
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
EST: gi|110691925|gb|EE070587.1|EE070587
EST:     GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAG                         GTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT
genomic: GCTGTATTGTTCTTCGTTTTGTTCGTGGCCAGTTTGACCCTACATCCAAGgtaagaaata ... ataacttcagGTGACTGTAGGAGCTTCATTCTTGTCACAAACAATTGCCTTGCAAGATTCT