Sequence
atgc intronic sequence ATGC exonic sequenceTTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcattttcttttaacaaccaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G27200.1 (Glycine max), 5'ss of exon 3
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcatt--ttcttttaacaaccaa------
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TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaaga-----caagaattaacactttcagcag--tact-tattttttgctttctgtagtaagacaaatctatttgcttaccttgttttttgtgatgtttagttactg
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G08170.1 (Glycine max), 5'ss of exon 3
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcattttcttttaacaaccaa--------
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TTATGTGGCCCATATAGATGATATTTTCAAGGACTTCACTTCCTATAAGGTTCGAGTTCCTGTAACTGGGGCAATAATTCTTGATGAAACATATGAAAGGgtaaga-----caagaataaacactttcagcag--tact-tattttttgctttctgtagtaagacaaatctatttgctttccttgttttcttgtggtatatctatgtt
upper sequence: Vv13s0019g04310.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G13570.1 (Arabidopsis thaliana), 5'ss of exon 3
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcattttcttttaacaaccaa
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TTATGTTACTCACATTGATGATATCTTTAAAGACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACATATGAAAGGgtaagaaccctgtggggtgatatttaggt-----ttact---tattagttaatgctt----------accctttttgtttcattgtcatttt-cag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110366533|gb|EC930443.1|EC930443EST: TTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGG TGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGA
genomic: TTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactc ... taattaacagTGCTTACTAGTGAAGGGATGGAAAGGAACAAGCTGGAGTTTTCCCCGTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTATGTTGCTCACATAGATGATATTTTTAAGGACTTCACTTCCTACAAGGTTCGAGTACCTGTAACTGGGGCAATCATTTTGGATGAAACCTTTGAACGGgtgaggactcttgtcaatgaaagctagggaaagattattctattttggtcctttcttggagagaaaaatcccttttgtagcattttcttttaacaaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacca