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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAATACCTTTCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaacttctactgtaaactttgcaactctatttttacccttgttatttttcctgaaatgcttttgcttctacttcataaagttgttctgatggtcaaacttgttttccag

Basic information

species Vitis vinifera
transcript Vv13s0019g04120.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71857591|gb|DT006646.1|DT006646
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|71861495|gb|DT010550.1|DT010550
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|71860611|gb|DT009666.1|DT009666
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|30255678|gb|CB971810.1|CB971810
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|110689183|gb|EE065183.1|EE065183
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|351025044|gb|FQ433461.1|FQ433461
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|71862645|gb|DT011700.1|DT011700
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|110418019|gb|EC984128.1|EC984128
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|110381307|gb|EC946633.1|EC946633
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|351037220|gb|FQ457053.1|FQ457053
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|71863408|gb|DT012463.1|DT012463
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|22010776|gb|BQ795810.1|BQ795810
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|22010775|gb|BQ795809.1|BQ795809
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|349828743|gb|FQ418478.1|FQ418478
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|110721127|gb|EE097773.1|EE097773
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|71860253|gb|DT009308.1|DT009308
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|351017619|gb|FQ435972.1|FQ435972
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC
EST: gi|161714461|gb|FC064448.1|FC064448
EST:     TCGCTTGGAATCTAATAACATCCGGTTACATCGAACAAACCATATATGGG                         ACGGTGGTCAGCACAGTTGGTCTTCNNNNNNNGGGAAAGCTGCTTGAACCC
genomic: TCGCTTGGAATCTAATAACATCCGGTTACATTGAACAAACCATATATGGGgtacaacaac ... tgttttccagACGGTGGTCAGCACAGTTGGTCTTCTTTTTTTGGGAAAGCTGCTTGAACCC