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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTGGTCTTGGAGGACCCTTCAGTTTTGATTCGTTCTCTAATAAGTGGAAGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatttctaaatgaatttctagtcaattcatgctcagaagcaaacaaaattccaagatttcatcaaataaacaaatcttttgtgtgaacatatgt...

Basic information

species Vitis vinifera
transcript Vv13s0019g03990.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351030947|gb|FQ438983.1|FQ438983
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|352787123|gb|FQ477743.1|FQ477743
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|110363001|gb|EC926566.1|EC926566
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|351024673|gb|FQ433088.1|FQ433088
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|71860360|gb|DT009415.1|DT009415
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|26263719|gb|CA814782.1|CA814782
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|71865159|gb|DT014214.1|DT014214
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAAC
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAAC
EST: gi|110698137|gb|EE075803.1|EE075803
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|161719344|gb|FC068284.1|FC068284
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA
EST: gi|33409872|gb|CF215499.1|CF215499
EST:     AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAG                         AGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGCTAGAAACTGGA
genomic: AGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatt ... aatctttcagAGAGGTGATTCAAAACATGAAGCAATGAGCAACGAGTGGTTAGAAACTGGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTTGGTCTTGGAGGACCCTTCAGTTTTGATTCGTTCTCTAATAAGTGGAAGAATCAGAAAAGGGAATCGAAATCATCTAAGAAAGAGCCTTCTTCTCAGgtagataatttctaaatgaatttctagtcaattcatgctcagaagcaaacaaaattccaagatttcatcaaataaacaaatcttttgtgtgaacatatgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataaa