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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTGACATGAAGCCCCATAATGAAAACATTCAGAACTATGGTAAACTCTGTCGTGAGCGGACGAGCAAATATATGACCAAAAGTAGACAGATACAGgttctagtgattgcttcatacatttgtgatgacacctgatacattttctttagtcttattctacttctttaaatcccattctcag

Basic information

species Vitis vinifera
transcript Vv13s0019g03980.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g03980.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G17350.1 (Glycine max), 5'ss of exon 4
CAAATTTGACATGAAGCCCCATAATGAAAACATTCAGAACTATGGTAAACTCTGTCGTGAGCGGACGAGCAAATATATGACCAAAAGTAGACAGATACAGgttctag-tgattgcttcatacatttg--tgatgacac-ctgatacattttctttagtcttattctactt---ctttaaatcccattctcag
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CAAGTTTGACATGAGGCCCCATAATCAAACCCTTGAACTCTATGGTAAACTCTGCCGTGAAAGGACAAACAAGTATATGGTCAAAAGTAGACAGATACAGgttttttcttatagctctagttctttaaatgttgatccattgatttaggcaaacaatttccattacctttgacttctgaattcttttttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294966622|gb|GW839613.1|GW839613
EST:     TCTGTCGTGAGCGGACGAGCAAATATATGACCACAAGTGGACAGATACAG                         GTGATTGACAATGANTA-TGGGTCACATATGCGGCCTATGCCAGGGATGGT
genomic: TCTGTCGTGAGCGGACGAGCAAATATATGACCAAAAGTAGACAGATACAGgttctagtga ... ccattctcagGTGATTGACAATGA-TAATGGGTCACATATGCGGCCTATGCCAGGGATGGT