Sequence
atgc intronic sequence ATGC exonic sequenceGAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttccacaactgtatacagtgaataaattaatttgtaatccctctgttgatgctcaagaaaactcagtaaagggaaagaaaaaagggaat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G07160.1 (Glycine max), 5'ss of exon 3
GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttcc--acaactgtatacagtgaataaattaatttgtaatccctctgttgatgctcaagaaaactcagtaaagggaaagaaaaaagggaat-
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GAAACTCCAGAGCCTTTCCCTCTTCCAACGGAAGCCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccatgcctccctgagagaaaatgaagatgaagaagaaacga-gatggagactaaaag--gagaaggcctaaactaaaatagaacc
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G41810.2 (Glycine max), 5'ss of exon 3
GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttccacaact-gtatacagtgaataaattaatttgtaatccctctgttgatgctcaa-gaaaactcagtaaagggaaagaaaaaagggaat
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GAAACTCCAGAGCCTTTCCCTCTTCCAACCGAAACCTCTATTGTAAAAGCTGCAGCAGGATGGGCTCATTGTGTTGCTGTAACAGgtaaggtggatttccttaccttgcaaccttgaaagaaatagaagaagaaacgagatgatgagactgaaaggagaagtcctgaactaaaatagaacctata--
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G34470.1 (Glycine max), 5'ss of exon 3
GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttccacaactgtatacagtgaataaattaatttgtaatccctctgttgatgctcaagaaaactcagtaaagggaaagaaaaaagggaat----
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GAAATTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTAAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACAGgtaaggttcatttacttatcttgct----tgaaaaggaagggacatagtgtgattgaaaggggaagggataaaataataaaatcaaattgaattggcagtattg
upper sequence: Vv13s0019g02280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G03870.1 (Glycine max), 5'ss of exon 3
GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttccacaactg--tatacagtgaataaattaatttgtaatccctctgttgatgctcaagaaaactcagtaaagggaaagaaaaaagggaat-
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GAAACTCCAGAGCCTTTCCCTCTTCCAACTGAAGTGACTATTGTTAAAGCTGCAGCTGGATGGGCACATTGTGTTTCTGTGACGGgtaaggtttatttacttatcttgccttgcaacgaaggaacataat-gtgattgaaaggggaagggataa--agtctaattgaattggtagtattgtcctgctgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110385026|gb|EC949508.1|EC949508EST: TTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAG AGAATGGAGAAGTTTACACATGGGGATGGAAAGAGTGTGTTCCCTCTGGAA
genomic: TTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactga ... tgaaatacagAGAATGGAGAAGTTTACACATGGGGATGGAAAGAGTGTGTTCCCTCTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAACGCCTGAGCCTTTTCCTCTTCCGACTGAAGCTTCTATAGTGAAAGCTGCAGCAGGTTGGGCCCATTGTGCTTCTGTCACAGgtactactgatttccacaactgtatacagtgaataaattaatttgtaatccctctgttgatgctcaagaaaactcagtaaagggaaagaaaaaagggaat
- - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagggaa