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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCAACAACAGAAGAAAAGGACATGGTTTTCCATGAAATTATGCCCCAAGCCCTTTCTCTAATGACTGATGTCTTTGGTAACTATGTGATCCAGAAGgtagcttggttttgccttccatgagcttgttttagcatgttatgtgattgtgctaaagctaaagtaaattgcagaataacttttatgtatggctaacatttgatgtttgtcttttcag

Basic information

species Vitis vinifera
transcript Vv13s0019g02000.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g02000.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G012964_T01 (Zea mays), 5'ss of exon 3
GACTGCAACAACAGAAGAAAAGGACATGGTTTTCCATGAAATTATGCCCCAAGCCCTTTCTCTAATGACTGATGTCTTTGGTAACTATGTGATCCAGAAGgtagcttggttttgccttccatgagcttgttttagcatgt-tatgtgattgtgctaaagctaaagtaaattgcagaataacttttatgtatggctaacatttgatgtttgtcttttcag
 || || |  || ||||||||||||||||||||    ||||||||||| ||||| ||  |  ||||||||||||| ||||| || |||||  |||| |||||||    || | |      | | ||| |  |    || | | || | ||||  |  | ||   || || | | |     |||||    |                             
AACAGCCAGTACTGAAGAAAAGGACATGGTTTTTTCAGAAATTATGCCTCAAGCTCTCACATTAATGACTGATGTATTTGGAAATTATGTTGTCCAAAAGgtaggagtgtatgg------aagtgct-gcctggatatctgtctgaggttgtcttgtatcttttgttaact-cggtgctcctttttctcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161715080|gb|FC062734.1|FC062734
EST:     AAGCCCTTTCTCTAATGACTGATGTCTTTGGTAACTATGTGATCCAGAAG                         TTTTTTGAGCATGGGACTGCATCCCAAATAAGGGAACTGGCTGACCAACTC
genomic: AAGCCCTTTCTCTAATGACTGATGTCTTTGGTAACTATGTGATCCAGAAGgtagcttggt ... gtcttttcagTTTTTTGAGCATGGGACTGCATCCCAAATAAGGGAACTGGCTGACCAACTC
EST: gi|161719655|gb|FC069413.1|FC069413
EST:     AAGCCCTTTCTCTAATGACTGATGTCTTTGGTAACTATGTGATCCAGAAG                         TTTTTTGAGCATGGGACTGCATCCCAAATAAGGGAACTGGCTGACCAACTC
genomic: AAGCCCTTTCTCTAATGACTGATGTCTTTGGTAACTATGTGATCCAGAAGgtagcttggt ... gtcttttcagTTTTTTGAGCATGGGACTGCATCCCAAATAAGGGAACTGGCTGACCAACTC