Sequence
atgc intronic sequence ATGC exonic sequenceTTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGgtattttctttcattgagtttgtgcttggggagtatctacccttgtgcttagcaatgcttcagcttaaattgttgcacatgccatttaaagggccttcttaaccaatgtttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g16570.2 (Oryza sativa), 5'ss of exon 4
TTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGgtattttctttcattgagtttgtgcttggggagtatctacccttgtgcttagcaatgcttcagcttaaattgttgcaca----tgccatttaaagggccttcttaaccaatgtttgtag
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TTCTTATGTTGTTCATGGTACTGAACTCACACCAGATGTCTCCGAACTTTTTGgtaagttatca-attgatggtatgtattatgcttatatagcttgatgg--agaaatttcatgatttgtcgggttgcgcggaattgtctcttgtag------------------------
upper sequence: Vv13s0019g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G04160.1 (Glycine max), 5'ss of exon 5
-TTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGgtattttctttcattgagtttgtgcttggggagtatctacccttgtgcttagcaatgcttcagcttaaattgttgcacatgccatttaaagggccttcttaaccaatgtttgtag
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GTTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTggtaaggtcttgtagta------tgtaaagcagacatgcaagtttttttatgaaaataatgacatttaatttattcta---gtggtttataaggtttt----atctctatttgta-
upper sequence: Vv13s0019g01960.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G34130.2 (Glycine max), 5'ss of exon 4
TTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGgtattttctttcattgagttt-gtgcttggggagtatctacccttgtgcttagcaatgcttcagcttaaattgttgcacatgccatttaaagggccttct-----taaccaatgtttgtag
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TTCTTCTGTTATTCATGATACTGAACTCTCACCAGATGTCCCCAAACTTTCTGgtaaggtcttgtagtaagtaaagcagacatgaaagttttttttttatg---aaaaaaactaca-tttaatttattcta---gtggtttataaggtcttatctgagttatctctatttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30251477|gb|CB969210.1|CB969210EST: CAGATGTCACCTAACTTTCTG ATCTGGCTGGTTCTTGGCATCTTTCTGATGGCCACAACCCTCAGGATGTAT
genomic: CAGATGTCACCTAACTTTCTGgtattttctt ... atgtttgtagATCTGGCTGGTTCTTGGCATCTTTCTGATGGCCACAACCCTCAGGATGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCTTTTGCTGTTCATGATACTAAACTCACACCAGATGTCACCTAACTTTCTGgtattttctttcattgagtttgtgcttggggagtatctacccttgtgcttagcaatgcttcagcttaaattgttgcacatgccatttaaagggccttcttaaccaatgtttgtag
- - - GCTGTT
- - - - - - - - - - - - - - - - CAGATG