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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctattcttacagctttatcttgccatatcttttctggttaaagttgaaagttcctgttacatgttcttttatgttgtttcttccag

Basic information

species Vitis vinifera
transcript Vv13s0019g01900.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g01900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G34120.1 (Glycine max), 5'ss of exon 3
AGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctattcttacagctttatcttgccatatcttttctggttaaagttgaaagttcctgttacatgttcttttatgttgtttcttccag
||||||||||||||||||||| ||||| ||  | ||||| || ||| |||| || |||| ||| || ||||| ||||| |||||| ||||||| ||||||||  | | |  |  ||   || ||    | |||| |       | || |||   | ||  |  | ||||  ||| | || |  || | ||||
AGTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCTGTGAAAACCATGAAGgtctaacaaagcaaact-tttgatgaaactatattta----aataaaggttttcaattttttct-catg--cttatctgctaattttgccag

upper sequence: Vv13s0019g01900.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G04170.1 (Glycine max), 5'ss of exon 3
AGTTTTTGACACTACACATGAGGATAATACAGTGTTCTCATTTGAGCTTGGGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctattcttacagctttatcttgccat---atcttttctggttaaagttgaaagttcctgttacatgttcttttatgttgtttcttccag-
 |||||||||||||||||||| ||||| ||  | ||||| || ||| |||| || |||| ||| || ||||| ||||| |||||  ||||||| ||||||||  | | ||  | |||     | |||   ||   |   | | ||  ||| | |      |  | |  ||||  ||| | || |  || | |||| 
-GTTTTTGACACTACACATGAAGATAACACCATCTTCTCTTTCGAGATTGGAAAGGGCAGTGTTATCAAGGCTTGGGAAATTGCAGTGAAAACCATGAAGGtctagcaatagtaacaaagcaaacttttgatgaaactatatttgaataagggtttttaattttatctcatg--cttatctgctaattttcccagg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28967033|gb|CB346066.1|CB346066
EST:     GGAAAGG-ACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|110366799|gb|EC930717.1|EC930717
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|71877473|gb|DT026528.1|DT026528
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|351029576|gb|FQ427416.1|FQ427416
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|351024603|gb|FQ433018.1|FQ433018
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|22015347|gb|BQ800381.1|BQ800381
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|77587550|gb|DV222939.1|DV222939
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|110376394|gb|EC941458.1|EC941458
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|110415144|gb|EC981021.1|EC981021
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|28967261|gb|CB346294.1|CB346294
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|110417551|gb|EC983617.1|EC983617
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|110422056|gb|EC988368.1|EC988368
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
EST: gi|30302283|gb|CB979077.1|CB979077
EST:     GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAG                         GTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT
genomic: GGAAAGGCACTGTAATTAAGGCATGGGACATTGCTTTGAAAACAATGAAGgttaatctat ... tttcttccagGTTGGGGAGGTTGCAAAAATCACTTGCAAGCCAGAGTACGCATACGGAGCT