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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagttatagtgttctttattagagcatattttatgcttttgtgtaagggaaaagtgcttaaagttgctgtcaaactacag

Basic information

species Vitis vinifera
transcript Vv13s0019g00910.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g00910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g38550.1 (Oryza sativa), 5'ss of exon 2
TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagtt--atagtgttctttattagagcatattttatgcttttgtgtaagggaaaagtgcttaaagttgctgtcaaactacag
|||||| || | ||| |||||  | ||||| || || |   | || || || || || ||| | || ||||| ||||||||||| ||||||||||||||| || |   || || ||| |  |   || ||| | |   || |      |   | | || | ||  ||  |            
TGATGGAGGCTACTTCAATGCAATAATGACCTTCCCCCAGAATTATCCGAATAGTCCCCCATCAGTAAGGTTTACCTCTGAGATGTGGCATCCAAATGgtaagcttgctattgatctatgattttgc-tatatcaattttctaacagggtttataatgttcaa--ttcttag----------

upper sequence: Vv13s0019g00910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G085600_T03 (Zea mays), 5'ss of exon 3
TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagtta-----tagtgttctttattagagcatattttatgc----ttttgtgtaagggaaaagtgcttaaagttgctgtcaaactacag
|||||| || | ||| |||||  | ||||  || ||||   | |||||||||||||| ||| | || || || |||||||| || ||||||||||||||| || |      |||||    || |       || || ||      || ||| |   |  |   ||| |||  ||   |  ||||  |||
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCACAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtcagctttttattagtgaaaattgtatttatttacttcatctgcagttctgttttctgacatcatgcataatatttgagg-aaacgccag

upper sequence: Vv13s0019g00910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G007300_T02 (Zea mays), 5'ss of exon 3
TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttag----ttat-agtgttctttattagagcatattttat--gcttttgtgtaagggaaaagtgcttaaagttgctgtcaaactacag-
|||||| || | ||| |||||  | ||||  || |||    | |||||||||||||| ||| | || || || |||||||| || ||||||||||||||| ||    |||| ||||    || |       || |||||  ||| || |||      | |      | | |   ||   || | |   
TGATGGAGGGTACTTCAATGCAATAATGAGCTTCCCAGAAAATTACCCAAACAGCCCGCCATCAGTCAGATTTACCTCTGAAATGTGGCATCCAAATGgtaagatttttattagtgaaagttgtatttatttagtttatccgctgttatgttttctgacatcatgcatattatttggggaaatgccag

upper sequence: Vv13s0019g00910.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G14980.1 (Glycine max), 5'ss of exon 3
TGATGGGGGTTTCTTTAATGCTGTCATGACTTTTCCACCCGACTACCCAAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagttatagtgttctttattagagcatattttatgcttttgtgtaagggaaaagtgcttaaag----ttgctgtcaaactacag---
 || ||||| || || |||||| | |||| ||| ||| || | |||||||| || || ||  | |||| ||||||||| ||||||||||| || ||||||||||| |  | || || ||| | |  | |  | || |   |   ||    |||||| | |  |    || ||||  || |   |   
CGAGGGGGGATTTTTCAATGCTATTATGAGTTTCCCATCCAATTACCCAAATAGTCCACCTTCAGTGAAGTTCACCTCAGAGATATGGCACCCCAATGgttagtttttttttttttaatttgtgattttgctttgatag-gaacaacatgaaagtgatcagtgatgtttcctgttcaatttttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110706214|gb|EE081542.1|EE081542
EST:     AAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATG                         TTTACCCTGATGGGAAAGTTTGCATTTCAATCCTTCACCCCCCTGGTGATG
genomic: AAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagttata ... caaactacagTTTACCCTGATGGGAAAGTTTGCATTTCAATCCTTCACCCCCCTGGTGATG
EST: gi|110408251|gb|EC973881.1|EC973881
EST:     AAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATG                         TTTACCCTGATGGGAAAGTTTGCATTTCAATCCTTCACCCCCCTGGTGATG
genomic: AAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagttata ... caaactacagTTTACCCTGATGGGAAAGTTTGCATTTCAATCCTTCACCCCCCTGGTGATG
EST: gi|110687133|gb|EE064279.1|EE064279
EST:     AAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATG                         TTTACCCTGATGGGAAAGTTTGCATTTCAATCCTTCACCCCCCTGGTGATG
genomic: AAACAGCCCTCCAACCGTGAGGTTCACCTCTGAGATATGGCATCCAAATGgttagttata ... caaactacagTTTACCCTGATGGGAAAGTTTGCATTTCAATCCTTCACCCCCCTGGTGATG