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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaattttctactgtgtcattctttggtgcacgaaagtagtgatatcacagatgctgcaattggtagttgattttctttggctccaaaaaaatt...

Basic information

species Vitis vinifera
transcript Vv13s0019g00840.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110700937|gb|EE078028.1|EE078028
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|71860037|gb|DT009092.1|DT009092
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|71882833|gb|DT031888.1|DT031888
EST:     GCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: GCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110703601|gb|EE080591.1|EE080591
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110702160|gb|EE080556.1|EE080556
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|71863746|gb|DT012801.1|DT012801
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|71859225|gb|DT008280.1|DT008280
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTT-CTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110357315|gb|EC920771.1|EC920771
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110723901|gb|EE099257.1|EE099257
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110720753|gb|EE096961.1|EE096961
EST:     GAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: GAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110721290|gb|EE098120.1|EE098120
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110727671|gb|EE104694.1|EE104694
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110714087|gb|EE090592.1|EE090592
EST:     CAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
genomic: CAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110687991|gb|EE066031.1|EE066031
EST:     CACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: CACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|33407947|gb|CF213574.1|CF213574
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGAAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110692310|gb|EE071412.1|EE071412
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|110356627|gb|EC919593.1|EC919593
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|30299440|gb|CB976234.1|CB976234
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCGAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
EST: gi|71860871|gb|DT009926.1|DT009926
EST:     TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAG                         GTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA
genomic: TCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaa ... ttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAATATGAGAATTTTGGTTACGGGAGGGGCTGGATTCATTGGCTCTCACCTTGTAGACAAATTGATGCAGAATGAGAAGAATGAGgtatgcctaattttctactgtgtcattctttggtgcacgaaagtagtgatatcacagatgctgcaattggtagttgattttctttggctccaaaaaaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa