Sequence
atgc intronic sequence ATGC exonic sequenceGAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcattctgtacttttttcctcaagcttctattaatatcaagatgcattctcttccaatcctaccactattggtaaatagtta...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g11550.1 (Oryza sativa), 5'ss of exon 9
GAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcattctgtacttttttcctcaagcttctattaatatcaagatgcattctcttccaatcctaccactattggtaaatagtta---
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AACAAGGTCTTTGTTGTTCATGGAGGTCTCTTTAGTGTTGATGGTGTTAAGCTTTCAGATATTAGAGCCATCGATCGATTCCGTGAGCCTCCTGAAGAAGgta-gctatttatttcttttctattttg--tatgtgcttgattttcagcagattctaggtatgatccaccttgtcttttccaatttatcattgaagttcgctc
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G126435_T02 (Zea mays), 5'ss of exon 8
GAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcattctgtacttttttcctcaagcttct-----attaatatcaagatgcattctcttccaatcctaccactattggtaaatagtta
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AACAAGGTCTTTGTGGTTCATGGAGGGCTATTTAGTGTTGATGGGGTTAAGCTTTCAGACATTAGGTCCATTGATCGTTTTTGTGAACCACCTGAAGAAGgtacg----atatcctattttttctatacttggttaatgctgcttatttgcaactaatgttatgaaatgatttcctactgtggcagttc-atctgcacttgattt
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G42380.1 (Glycine max), 5'ss of exon 9
GAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcat-tctgtacttttttcctcaagcttctattaatatcaagatgcattct--cttccaatcctaccactattggtaaatagtta-------------------------------------------------------
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GAGAAAGTTTTCGTAGTTCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATCCGATCAATTAATAGATTTTGTGAGCCTCCTGAAGAAGgttagatacatccttttttgttgtctctaattgatctcccagttaaccacacatacctaaatccctctaaactttccattcttgcactacatagactcacctttggctttttcaccctcagtattgtagttttatgtacctatgtttggtatgtgtag
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G12440.1 (Glycine max), 5'ss of exon 9
GAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcat-tctgtacttttttcctcaagcttctattaatatcaagatgcattc---tcttccaatcctaccactattgg--taaatagtta--------------------------------------------------------
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-AGAAAGTTTTCGTAGTACATGGTGGTCTTTTTAGTGTTGATGGAGTCAAAGTCTCTGACATCCGATCAATTAATCGATTTTGTGAGCCTCCTGAAGAAGGttagataaatccttttttgttgtctctaattgatctcccagttatctgcacatatctaaatccctctaaaccttccattcttgcacttcatagactaaacccctctggctttttcacccttagtattttagttttatttacctatgtttggtatgtgtagg
upper sequence: Vv12s0142g00720.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G42810.1 (Arabidopsis thaliana), 5'ss of exon 9
GAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcattctgtacttttttcctcaagcttctattaatatcaagatgcattctcttccaatcctacc--actattggtaaatagtta
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GGGAAGGTCTTCGTGGTACATGGAGGTCTTTTCAGTGTTGACGGCGTGAAACTCTCAGACATCAGAGCCATTGACAGATTCTGTGAGCCACCAGAGGAAGgtatgtt-----------tcatcatatacatcttctgtaagattacttctcatgtaattgtgttctgtttaatcatcttatcttgctaatggtttatgcag-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110380672|gb|EC945956.1|EC945956EST: GCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAG GATTGATGTGTGAACTGCTGTGGAGTGATCCCCAACCTTACCCTGGAAGAG
genomic: GCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctaga ... attccataagGATTGATGTGTGAACTGCTGTGGAGTGATCCCCAACCTTACCCTGGAAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAAAGATCTTTGTAGTTCATGGAGGTCTATTCAGTGTTGATGGAGTGAAGCTCTCTGACATTAGAGCAATTGACCGGTTTTGTGAGCCTCCTGAGGAAGgtaagctagatatgctgttcattctgtacttttttcctcaagcttctattaatatcaagatgcattctcttccaatcctaccactattggtaaatagtta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcttcc