1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AATAGATCTGAGTAAGCACCATGTGCCTAAGACATTTGTGGATAAAGTAGCATACAGGACAGTGAAACTCCTTCGTATTCCAACTGATATATTTTTTCAGgtgtgctatcttatttggtcttttcttcctcttttcaagatgtttttatggttattgggttacatgttgttccaagacaatgaatgatctgcccatgtga...
species | Vitis vinifera |
transcript | Vv12s0142g00430.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTCGTATTCCAACTGATATATTTTTTCAG AGAAGATATGGGTGTCGTGCAATGATGCTGGAAACAGTGGCAGCTGTTCCTEST: gi|110705975|gb|EE083437.1|EE083437
genomic: CTTCGTATTCCAACTGATATATTTTTTCAGgtgtgctatc ... tacattgcagAGAAGATATGGGTGTCGTGCAATGATGCTGGAAACAGTGGCAGCTGTTCCT
EST: CATACAGGACAGTGAAACTCCTTCGTATTCCAACTGATATATTTTTTCAG AGAAGATATGGGTGTCGTGCAATGATGCTGGAAACAGTGGCAGCTGTTCCTEST: gi|110383282|gb|EC947645.1|EC947645
genomic: CATACAGGACAGTGAAACTCCTTCGTATTCCAACTGATATATTTTTTCAGgtgtgctatc ... tacattgcagAGAAGATATGGGTGTCGTGCAATGATGCTGGAAACAGTGGCAGCTGTTCCT
EST: CATACAGGACAGTGAAACTCCTTCGTATTCCAACTGATATATTTTTTCAG AGAAGATATGGGTGTCGTGCAATGATGCTGGAAACAGTGGCAGCTGTTCCT
genomic: CATACAGGACAGTGAAACTCCTTCGTATTCCAACTGATATATTTTTTCAGgtgtgctatc ... tacattgcagAGAAGATATGGGTGTCGTGCAATGATGCTGGAAACAGTGGCAGCTGTTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAGATCTGAGTAAGCACCATGTGCCTAAGACATTTGTGGATAAAGTAGCATACAGGACAGTGAAACTCCTTCGTATTCCAACTGATATATTTTTTCAGgtgtgctatcttatttggtcttttcttcctcttttcaagatgtttttatggttattgggttacatgttgttccaagacaatgaatgatctgcccatgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagacaa