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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttcacacctccagaaaaagggtgtgcttttggcatgtat...

Basic information

species Vitis vinifera
transcript Vv12s0134g00160.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G38040.2 (Glycine max), 5'ss of exon 3
TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttcacacctccagaaaaagggtgtgcttttggcatgtat------
| ||||| || |||||||| || |||||| | ||||||||||||||||||||||||||||||||| ||||| |  || | ||||| |||||||||||||||||||  | |  |  ||   |   | ||   ||      || |   |    | |   |        |  |    ||||    |||   ||   | || |       
TGAATGGCGTTGGCAACAGGGAGCAAAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaagtccctcttaattaagcagtcattatcctaaa---cattatattactatatttta---ctgtaagtaagtaaaagcaatgttagttgaacctggactctttc

upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G32390.1 (Glycine max), 5'ss of exon 3
TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttcacacctccagaaaaagggtgtgcttttggcatgtat-
| ||||| || |||||||| || || ||| | ||||||||||||||||||||||||||||||||| ||||| |  || | ||||| ||||||||||||||||||| ||   ||   ||   |   |    || || ||  ||  | |    ||    |    | |       || ||      |||   |  | |    | 
TGAATGGCGTTGGCAACAGGGAGCAGAGACTCAACCTCTGGTTCGACCCCACCAAGGACTTCCACACCTACTCCATCTTCTGGAACCAGCGCCAAGTTGTgtaag-tcccacttaattaattaaacacggtcattatcctaaacattaaataactagttaagtaattatattagtaattactcgtgtactaagtaaaagta

upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G45860.1 (Glycine max), 5'ss of exon 3
TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttca--cacctccagaaaaagggtgtgcttttggcatgtat---
| || |||||||||||||| || |||||  | ||||| |||||||||||||||||||| || ||||| ||| |  || | |||||||| || |||||||||||||| |     |  ||||| | | |   | |   | | || |  |  | |     ||   |||   | ||  |||   | ||  || ||  |||     |   
TGAACGGTGTGGGCAACAGGGAGCAAAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTTCACTCATACTCTATCTTCTGGAATCAACGTCAAGTTGTgtaagcac-----ccattccccttcttaattatgcatattaaagtttaagtatttaatgtaatcatgtaactttagagttatggcatgtttgaggcgatggtcaa

upper sequence: Vv12s0134g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G10960.1 (Glycine max), 5'ss of exon 3
TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttcacacctccagaaaaagggtgtgcttttggcatgtat---
| || || ||||||||||| || |||||  | ||||| |||||||||||||||||||| || ||||| ||| |  || | |||||||| || |||||||||||||| |    ||   | | |      |   ||    | || |  |   |      |  ||    || |  | |       | |    ||   | |      
TAAACGGAGTGGGCAACAGGGAGCAAAGGCTCAACCTTTGGTTCGACCCCACCAAGGATTTTCACTCATACTCTATCTTCTGGAATCAACGTCAAGTTGTgtaagcacccattccccttcttaattgatgcattaaagttaaagtatttaatgtaattatgta---acttttatagtgttattttaaaattaaaaagcgatga

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110688980|gb|EE068148.1|EE068148
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351017461|gb|FQ435814.1|FQ435814
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351028725|gb|FQ433155.1|FQ433155
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351040743|gb|FQ438287.1|FQ438287
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATAGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110686933|gb|EE063904.1|EE063904
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351029572|gb|FQ427412.1|FQ427412
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|34319415|gb|CF372169.1|CF372169
EST:     CTACACATTCATGTGGAATCAGCGGCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACNNCAACATGGAGAAACA
genomic: CTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349827004|gb|FQ419095.1|FQ419095
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351027321|gb|FQ444570.1|FQ444570
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349825987|gb|FQ415792.1|FQ415792
EST:     ACCAAGGACTTCCACCCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351012306|gb|FQ429991.1|FQ429991
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110709651|gb|EE085300.1|EE085300
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349832943|gb|FQ423065.1|FQ423065
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71867531|gb|DT016586.1|DT016586
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349825692|gb|FQ421791.1|FQ421791
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110699501|gb|EE076556.1|EE076556
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349829506|gb|FQ420038.1|FQ420038
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351040990|gb|FQ443766.1|FQ443766
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351052121|gb|FQ455414.1|FQ455414
EST:     ACCAAGGGCTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|30253115|gb|CB970666.1|CB970666
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71866834|gb|DT015889.1|DT015889
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71875269|gb|DT024324.1|DT024324
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71869588|gb|DT018643.1|DT018643
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349832307|gb|FQ420868.1|FQ420868
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351015305|gb|FQ445589.1|FQ445589
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|161712829|gb|FC062352.1|FC062352
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110390828|gb|EC955759.1|EC955759
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110421392|gb|EC987688.1|EC987688
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351012384|gb|FQ426985.1|FQ426985
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349823526|gb|FQ414936.1|FQ414936
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71866337|gb|DT015392.1|DT015392
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110688683|gb|EE067515.1|EE067515
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110381292|gb|EC946616.1|EC946616
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110693623|gb|EE070014.1|EE070014
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349829444|gb|FQ419976.1|FQ419976
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACATGTGCACACCAACATGGAGAAACG
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349830610|gb|FQ416908.1|FQ416908
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351040330|gb|FQ434463.1|FQ434463
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGTACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351041004|gb|FQ443780.1|FQ443780
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTAGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|34416827|gb|CF415581.1|CF415581
EST:     ACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351026240|gb|FQ428252.1|FQ428252
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349828623|gb|FQ418358.1|FQ418358
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCTAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAAAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110398647|gb|EC965117.1|EC965117
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110691103|gb|EE068821.1|EE068821
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110685903|gb|EE063040.1|EE063040
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351031870|gb|FQ460127.1|FQ460127
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATAGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71868382|gb|DT017437.1|DT017437
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351016494|gb|FQ423921.1|FQ423921
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGCGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349828094|gb|FQ415422.1|FQ415422
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|51052566|gb|CO819625.1|CO819625
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351025289|gb|FQ434302.1|FQ434302
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110690222|gb|EE067132.1|EE067132
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351012970|gb|FQ433697.1|FQ433697
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351013795|gb|FQ433947.1|FQ433947
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGGCCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349830705|gb|FQ417003.1|FQ417003
EST:     ACCAAGGACTTCCGCTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAGCATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110687595|gb|EE065187.1|EE065187
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351033100|gb|FQ446453.1|FQ446453
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|34320087|gb|CF372841.1|CF372841
EST:     AAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCCAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACCCCAACATGGAGAAACA
genomic: AAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351034298|gb|FQ448095.1|FQ448095
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71865855|gb|DT014910.1|DT014910
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110686348|gb|EE063884.1|EE063884
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349828857|gb|FQ419190.1|FQ419190
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71871566|gb|DT020621.1|DT020621
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|349816739|gb|FQ404986.1|FQ404986
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|110362225|gb|EC925743.1|EC925743
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|71866631|gb|DT015686.1|DT015686
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|34415420|gb|CF414174.1|CF414174
EST:     TCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACNNCAACATGGAGAAACA
genomic: TCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351018859|gb|FQ425761.1|FQ425761
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
EST: gi|351031433|gb|FQ446636.1|FQ446636
EST:     ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGT                         ATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA
genomic: ACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctt ... ttttgctcagATTTCTTGTGGATGAGACCCCAGTACGTGTGCACACCAACATGGAGAAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCAATGGTGTGGGCAACAGAGAACAAAGATTGAACCTCTGGTTCGACCCCACCAAGGACTTCCACTCCTACACATTCATGTGGAATCAGCGCCAAGTTGTgtaagctctttctcttttcccttccctttctctttctctcaatgagtcggaaaaggctgggttcacacctccagaaaaagggtgtgcttttggcatgtat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaaaaa