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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGAAAAAGCTCATAATCACATTCCAATGGCTTGTAAAGACTCAGTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAGgtataagttttcccaactaaaattttcaattttattctctctttttctctctggattctgatttctgcggtgtaattgcag

Basic information

species Vitis vinifera
transcript Vv12s0059g02280.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26265133|gb|CA816196.1|CA816196
EST:     GTAGCAATCCTGTACATGTTTGATCTTACAAGCAGGTGTACCTTGAATAG                         TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG
genomic: GTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAGgtataagttt ... gtaattgcagTGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG
EST: gi|110383289|gb|EC947654.1|EC947654
EST:     GTAGCAATCCTGTACATGTTTGATCTTACAAGCAGGTGTACCTTGAATAG                         TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG
genomic: GTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAGgtataagttt ... gtaattgcagTGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG
EST: gi|34544942|gb|CF513174.1|CF513174
EST:     GTAGCAATCCTGTACATGTTTGATCTTACAAGCAGGTGCACCTTGAATAG                         TGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG
genomic: GTAGCAATCCTGTACATGTTTGATCTTACTAGCAGGTGTACCTTGAATAGgtataagttt ... gtaattgcagTGTCATCAGTTGGTATCACCAAGCAAGGAAATGGAATCAG