1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATTCATCTCGGCGGCCGCCGGTGGCGTCGGAATATTCGCCGGGCAGTTGGCTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataacaaagagagataacgaggaatattaattttacatgttacaaacaaacaaggtcttaatttttttttcctaagatttttatttaattaatat...
species | Vitis vinifera |
transcript | Vv12s0059g00670.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAG GTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAACEST: gi|77580431|gb|DV219098.1|DV219098
genomic: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataac ... ctccatgcagGTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
EST: CAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAG GTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAACEST: gi|110372099|gb|EC936244.1|EC936244
genomic: CAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataac ... ctccatgcagGTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
EST: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAG GTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAACEST: gi|351041879|gb|FQ456089.1|FQ456089
genomic: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataac ... ctccatgcagGTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
EST: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAG GTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAGCTACAACEST: gi|110384509|gb|EC948950.1|EC948950
genomic: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataac ... ctccatgcagGTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
EST: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAG GTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAACEST: gi|110360849|gb|EC924270.1|EC924270
genomic: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataac ... ctccatgcagGTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
EST: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAG GTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
genomic: CTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataac ... ctccatgcagGTGAAACTATTGAAAGAGGAGTTTGGATATGATGAGGCATTCAACTACAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCATCTCGGCGGCCGCCGGTGGCGTCGGAATATTCGCCGGGCAGTTGGCTAAACTCAAAGGCTGTAGAGTCGTGGGCAGTACCGGGACCGATGAAAAGgtatgataacaaagagagataacgaggaatattaattttacatgttacaaacaaacaaggtcttaatttttttttcctaagatttttatttaattaatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa