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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCAGCAGAAGTTTGTGAAGCGTGACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtctttgttatgcttatatatttactaatatatcgtacttcatttgattttgaattatcctgaatatgaatcatataaccttattgcatgtag

Basic information

species Vitis vinifera
transcript Vv12s0059g00640.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110711717|gb|EE088518.1|EE088518
EST:     GACTCTAAAGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTANAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
EST: gi|37183584|gb|CF602938.1|CF602938
EST:     GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
EST: gi|110367432|gb|EC931364.1|EC931364
EST:     GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
EST: gi|110723286|gb|EE100428.1|EE100428
EST:     GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
EST: gi|110693148|gb|EE069126.1|EE069126
EST:     TACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
EST: gi|110698839|gb|EE076793.1|EE076793
EST:     GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
EST: gi|110720685|gb|EE096823.1|EE096823
EST:     GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACA                         GACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG
genomic: GACTCTAAGGACATTATTGGGGAAGTTCATAAAACTCATCATGCTATACAgtaagtcttt ... ttgcatgtagGACTTTGGATAAAACTATTTCCAATTTAGAGATGGAATTAGCTGCTGCCAG