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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat...

Basic information

species Vitis vinifera
transcript Vv12s0059g00270.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0059g00270.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G27440.1 (Arabidopsis thaliana), 5'ss of exon 2
AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat
|||||| | ||||| || |||||| |||| ||| ||||||||||| ||||| || | |||||||| |||||||| |||||||| || || |||||||| |||| | ||  |   || | |    || |   ||  | ||    |||| ||   |  |     |   |       || ||                     
AACCATTTGGGACATTTTCTTCTCGCAAGGTTGTTGCTTGATGACTTGAAGAAATCTGATTACCCTTCAAAGCGTCTCATCATCGTCGGATCCATTACCGgtatt-gtctagaatctgtataaccctacattgcaagatagagaatgattttgatcattgttatgtttgtttggtttag---------------------

upper sequence: Vv12s0059g00270.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G03630.2 (Arabidopsis thaliana), 5'ss of exon 3
AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtac-tagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat
|||||||| || ||||| ||||||||||||||||| ||||||||||||||  || | ||||| |||||||| ||  | ||||| || || || || |||||||  ||   ||     | ||| || | |        ||      ||  |||  | ||  |  ||| ||||     |     |  |     || ||     
AACCATCTCGGTCACTTTCTTCTCTCAAGATTGCTTCTTGATGACCTGAAAAAATCTGATTATCCATCAAAACGTATGATCATCGTAGGATCTATAACAGgtaaataacacag----acaacttgtccatttccaccaa-----gatagttcctagtatcaa-acaatgaatgttctt---ttctatgttcttgcag----

upper sequence: Vv12s0059g00270.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G54190.2 (Arabidopsis thaliana), 5'ss of exon 2
AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtac-tagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat--
|||||| | || ||||| ||||| ||||||||| || |||||||| ||||| |  | ||||| |||||||| || |||||||||||||| ||||| || |||   ||||    | ||| ||   |   |     | |  |  ||| |  || ||  || | ||  | |   |||  | |  | |        ||   ||    
AACCATTTGGGCCACTTTCTTCTTTCAAGATTGTTGATTGATGACTTGAAGAACTCCGATTATCCATCAAAACGTCTCATCATTGTTGGATCCATAACCGgtctgtagtct--cctcataa---gaagaatgctttatgtacttactactt-actctaaaccctaaatctgaaatcttattcgttttgtttcttattgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351052318|gb|FQ455490.1|FQ455490
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|349825727|gb|FQ421826.1|FQ421826
EST:     GCAGACAGATTACCCATCATAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGC
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGC
EST: gi|351036975|gb|FQ459497.1|FQ459497
EST:     GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351024357|gb|FQ423780.1|FQ423780
EST:     GCAAACAGATCACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351019797|gb|FQ439614.1|FQ439614
EST:     GCAAACAGATTACCCATTAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|352790469|gb|FQ478109.1|FQ478109
EST:     CAAACAGATTACCCATCAAAGCCGCTCATCATTGTTTGGCTCCCTTACAG                         GAAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCGGGGG
genomic: CAAACAGATTACCCATCAAAGCGGCTCATCATTGTT-GGCTCCATTACAGgtactagttc ... gatgtttcagGAAA-CACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGG
EST: gi|351035860|gb|FQ463705.1|FQ463705
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         AAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351046018|gb|FQ441401.1|FQ441401
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|349826737|gb|FQ418828.1|FQ418828
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351040767|gb|FQ438311.1|FQ438311
EST:     GCGAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAA-TGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351046996|gb|FQ454606.1|FQ454606
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GGAACACAAACACCTTGGCTGGAAA
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAA
EST: gi|352790521|gb|FQ478161.1|FQ478161
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCTCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351029565|gb|FQ427405.1|FQ427405
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351052019|gb|FQ455312.1|FQ455312
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|352798550|gb|FQ480575.1|FQ480575
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGAGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|33401796|gb|CF207423.1|CF207423
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGTTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351035767|gb|FQ463612.1|FQ463612
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351045658|gb|FQ440843.1|FQ440843
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351054935|gb|FQ440274.1|FQ440274
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351048713|gb|FQ449383.1|FQ449383
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCC
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCC
EST: gi|351052941|gb|FQ453928.1|FQ453928
EST:     GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351015379|gb|FQ447208.1|FQ447208
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351053123|gb|FQ455580.1|FQ455580
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351051565|gb|FQ450117.1|FQ450117
EST:     GCAAACAGATAACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCCAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|352786826|gb|FQ481201.1|FQ481201
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTACCCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351032378|gb|FQ461631.1|FQ461631
EST:     ACAAACAGATTACCCATCAAAGCGGCTCATCACTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGGCCCCAAAGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGG
EST: gi|351028317|gb|FQ427213.1|FQ427213
EST:     GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|349828483|gb|FQ417225.1|FQ417225
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351055274|gb|FQ441872.1|FQ441872
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351055571|gb|FQ452036.1|FQ452036
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCCTGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACC-TGGGG
EST: gi|351038936|gb|FQ457611.1|FQ457611
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351037337|gb|FQ460536.1|FQ460536
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351038373|gb|FQ461065.1|FQ461065
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|110726737|gb|EE102779.1|EE102779
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCCTGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACC-TGGGG
EST: gi|110416548|gb|EC982538.1|EC982538
EST:     GCAAACAGATTACCCATCAAAGGGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351038771|gb|FQ464637.1|FQ464637
EST:     GCAAACAGATTACCCATCANAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351038585|gb|FQ464451.1|FQ464451
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGCTAACCTGGGGG
EST: gi|351047090|gb|FQ454700.1|FQ454700
EST:     GCAAACAGATTACCCATCAAAACGGCTCATCATTGTTGGCTCCATTACAG                         GAAACAAAAACACCTTGGCTGGAAATGTGCCCCCAAAGGC
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCCCCCAAAGGC
EST: gi|352790520|gb|FQ478160.1|FQ478160
EST:     GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAG                         GAAACACAAACACCTTGGCTGGAAATGTGCC
genomic: GCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttc ... gatgtttcagGAAACACAAACACCTTGGCTGGAAATGTGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACCATCTTGGACACTTCCTTCTCTCAAGATTGCTGCTTGATGACCTGAAGCAAACAGATTACCCATCAAAGCGGCTCATCATTGTTGGCTCCATTACAGgtactagttcaacttcagaacctgccaaggatgtgaaatttttaatgtttcacaatacaaccacagtgaaaaaattgagacttaaaacagtttcaagaat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatacaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacag