1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAAACGAGCCACTGCATTTGGTCTAATGAAGATTGATGAGGAAGGCCGTATAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgatatttgaaataaacattcgtattaatttatgcttttgtgttcctctattctacaattttgtagttttaaagttggttaagaaggctgatacgttttcctttctgaactgttccttttaag
species | Vitis vinifera |
transcript | Vv12s0057g01480.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|71861397|gb|DT010452.1|DT010452
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCEST: gi|161718175|gb|FC065663.1|FC065663
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATC
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|110689182|gb|EE065182.1|EE065182
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|27584163|gb|CB006858.1|CB006858
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|30325486|gb|CD008748.1|CD008748
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|30324817|gb|CD008079.1|CD008079
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|71863688|gb|DT012743.1|DT012743
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|30324290|gb|CD007552.1|CD007552
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|33403137|gb|CF208764.1|CF208764
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|30253354|gb|CB970905.1|CB970905
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|110703129|gb|EE079706.1|EE079706
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCTEST: gi|27579307|gb|CB002002.1|CB002002
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
EST: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAG GTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
genomic: TAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgata ... tccttttaagGTCGATACTACCATCCTGGGTCTTGATGATGAGAGAGCTAAAGAAATGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACGAGCCACTGCATTTGGTCTAATGAAGATTGATGAGGAAGGCCGTATAATTGAATTTGCAGAGAAACCAAAAGGAGAGCAATTGAAAGCTATGAAGgtagatgatatttgaaataaacattcgtattaatttatgcttttgtgttcctctattctacaattttgtagttttaaagttggttaagaaggctgatacgttttcctttctgaactgttccttttaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA