Sequence
atgc intronic sequence ATGC exonic sequenceAGAGATGAAGCTCAGAGAAGAATAATGGCTGTCAATGAACCATATAAAATGGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTGgtaaggggattaacatcttttgctgtatggacattaaccttgaaggcactgttcaatttctctattcaatggctatgtggtggattcacatctaattgct...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g33500.1 (Oryza sativa), 5'ss of exon 3
AGAGATGAAGCTCAGAGAAGAATAATGGCTGTCAATGAACCATATAAAATGGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTGgtaaggggattaacatcttttgctgtatggacatta-accttga--aggcactgttcaatttctctat--------tcaatggctatgt-ggtggattcacatctaattgct-
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AGGGAAGAGGCCCAAAAGAGGATTGAAGCGCTTAATGAGCCATATAAGTTGGAAATTTTGGAGGGCATCAAGGAAGATCCTATCACAATCTATCACATTGgtttgtagtgccatctcgtttgattt-tgagcattacattttcgtcatgcattttttttttggttgatcggtggagtctatgctcatgttggtgaattcactgtatactgtag
upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G13740.1 (Glycine max), 5'ss of exon 4
------------------------------AGAGATGAAGCTCAGAGAAGAATAATGGCTGTCAATGAACCATATAAAATGGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTGgtaaggggattaacatcttttgctgtatggacattaaccttgaaggcactgttcaatttctctattcaatggctatgtggtggattcacatctaattgct
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AAATTTGCCACTCGTAGAGAAGAAgtttcaagagacgaagctcagagaagaatataggctctgaatgaaccatacaagttggagattttggatagcatttaggaggatcccatcactatttatc----------------------------------------------------------------------------------------------------------
upper sequence: Vv12s0057g00400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G37550.1 (Glycine max), 5'ss of exon 3
AGAGATGAAGCTCAGAGAAGAATAATGGCTGTCAATGAACCATATAAAATGGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTGgtaaggggattaacatcttttgctgtatggacattaac-cttgaaggcactgttcaatttctctattcaatggctatgtggtggattcacatctaattgct
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AGAGGCGAAGCTCATAGAAGAATATCGGCTCTGAATGAACCATACAAGTTGGAGATTTTGGAAAGCATTAAGGATGATCCCATCACCATTTATCACATCGgtagtgttcttgttcttctcagtttttaccgttttaattctctcatgccaagtgtatgtgtgtgagagagcgactatagagagagggaatgattatctgt-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161720644|gb|FC070254.1|FC070254EST: GGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTG GTGGTGAATGGTGGGACCTTTGTGCTGGGCCTCATGTTGAATATACTGGAA
genomic: GGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTGgtaaggggat ... cactttgcagGTGGTGAATGGTGGGACCTTTGTGCTGGGCCTCATGTTGAATATACTGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAGATGAAGCTCAGAGAAGAATAATGGCTGTCAATGAACCATATAAAATGGAAATTTTGGATAGCATCCAGGAAGATCCCATCACCATCTATCATATTGgtaaggggattaacatcttttgctgtatggacattaaccttgaaggcactgttcaatttctctattcaatggctatgtggtggattcacatctaattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA