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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGTAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGAgtttgcaccttagcggctctagctatcatgacattttcttatgaagaaaacacaatgaatacagttatgcttattattcatgtacag

Basic information

species Vitis vinifera
transcript Vv12s0055g00610.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G15200.1 (Glycine max), 5'ss of exon 20
------CTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGTAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGA-
      ||||| || || ||||| || ||||||||||||   ||  ||    | |||||||||||||||| ||||||||| |||||||| ||| ||||||||| ||  | |   |  |||    || |   |||    | || |   |||  | | | || ||||  |  |   | | |||||||      ||           
CGTAATCTTGTTAACTTATATGGATGTTGCATTGAAGGAAATAAAAGACTTTTGGTCTATGAGTATCTTGAAAACAAGAGTCTTGATCATGCAATATTTGgtatgattgatgttattttatattctgtgtatatatatatatatatatatatatatagca-aatgcttgta---aggtttattatgtgcaaaccattatttttt

upper sequence: Vv12s0055g00610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G25590.1 (Glycine max), 5'ss of exon 23
------CTTGTGAAATTGTATGGGTGCTGCATTGAAGGAGTAAACCGATCACTTGTCTATGAGTATCTTGTAAACAAGAGCCTTGATCAAGCACTATTTGGTAAGAg----------tttgcaccttagcggctctagct--atcatgacattttcttatgaagaaaacaca-atgaata--cagttatgcttattattcatgtacag---
      || || ||||| ||||| || |||||||| ||    ||  ||   ||||||||||||||||| | ||| ||||| |||||||||||| | ||||||| |||          |||     | || |  | |   |  ||  | |  | || || | |     |     || ||||   |   |   || |  ||  | |   |   
CGTAATCTGGTCAAATTATATGGATGTTGCATTGAGGGGAGTAAAAGACTGCTTGTCTATGAGTATCTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGgtatgagaaaatgatactttttttttcagtgtatatgtatgaatgcttatttgtttttctcattttcatttgtataaataactaaggacaattgtggtttgttttgggcag