1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGCGCTGCTGTTTGCCGGTCATGGAGGACTATGTGTAAAGAAATTGTTAGAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGgtaggatccatttgctctgctttatttgttttttttttttccggttccgtaatgaagttacgggcaacaaatactaaattctttccatttgtattttcag
species | Vitis vinifera |
transcript | Vv12s0055g00460.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAG CCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTEST: gi|71863069|gb|DT012124.1|DT012124
genomic: GAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGgtaggatcca ... gtattttcagCCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCT
EST: GAAGTCCAGAGTTTTGTACCAAACTTACCTTTCCAGTGTCCCTGAAGCAG CCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTEST: gi|71859885|gb|DT008940.1|DT008940
genomic: GAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGgtaggatcca ... gtattttcagCCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCT
EST: CAGTGTCCCTGAAGCAG CCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCTEST: gi|71864896|gb|DT013951.1|DT013951
genomic: CAGTGTCCCTGAAGCAGgtaggatcca ... gtattttcagCCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCT
EST: GAAGTCCAGAGTTTTGTACCAAACTTACCTTTCCAGTGTCCCTGAAGCAG CCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCT
genomic: GAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGgtaggatcca ... gtattttcagCCAGGGCCACGTGATGGGACTATCCAATGCTTCATCAAAAGGGATAAATCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGCTGCTGTTTGCCGGTCATGGAGGACTATGTGTAAAGAAATTGTTAGAAGTCCAGAGTTTTGTGCCAAACTTACCTTTCCAGTGTCCCTGAAGCAGgtaggatccatttgctctgctttatttgttttttttttttccggttccgtaatgaagttacgggcaacaaatactaaattctttccatttgtattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC