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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACCTGATGATGGTCGGAGATGGGATGGGCGCTACTGTCATTACTGGAAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttcattgagttgtgtcttaatttttggcatgccattttcttccaccatgaccccatgcttttgaatatagagaaagagaaattaatgctttgc...

Basic information

species Vitis vinifera
transcript Vv12s0035g01900.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|219555352|gb|FG984525.1|FG984525
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110720805|gb|EE097048.1|EE097048
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|30299914|gb|CB976708.1|CB976708
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110720829|gb|EE097093.1|EE097093
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110712489|gb|EE090170.1|EE090170
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110718997|gb|EE096470.1|EE096470
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110719558|gb|EE094801.1|EE094801
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110691694|gb|EE070092.1|EE070092
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110720563|gb|EE096596.1|EE096596
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110365827|gb|EC929306.1|EC929306
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTG
EST: gi|110719951|gb|EE095507.1|EE095507
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|46918111|gb|CN547440.1|CN547440
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTT
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTT
EST: gi|351046719|gb|FQ453335.1|FQ453335
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110720454|gb|EE096389.1|EE096389
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110713867|gb|EE090163.1|EE090163
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|219555560|gb|FG984645.1|FG984645
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110720859|gb|EE097151.1|EE097151
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110717135|gb|EE092727.1|EE092727
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG
EST: gi|110718209|gb|EE094778.1|EE094778
EST:     AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTG                         CTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACGTTTGAGAACACGG
genomic: AAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttc ... tggaatgcagCTGTTAAGGGCAAAGGATTTATTGCAAGAGACATGACATTTGAGAACACGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGAACCTGATGATGGTCGGAGATGGGATGGGCGCTACTGTCATTACTGGAAACCGGAGCTACATCGATGGCTGGACTACATATGCATCTGCAACCTTTGgtatgagttcattgagttgtgtcttaatttttggcatgccattttcttccaccatgaccccatgcttttgaatatagagaaagagaaattaatgctttgc

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaa