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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCGGAGTACAGCGGTATCAAAGTTGAACTGGTTCAGAACTTTGAGATGGGCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagttttttaatcaaaggaaatcatctgtggtacttgtgtttaggtttttaatattctaaaaggatgttatgttgatgtag

Basic information

species Vitis vinifera
transcript Vv12s0035g01130.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055139|gb|FQ440478.1|FQ440478
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|161712238|gb|FC061612.1|FC061612
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110368464|gb|EC932441.1|EC932441
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|161719271|gb|FC068941.1|FC068941
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110727170|gb|EE103626.1|EE103626
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110385087|gb|EC949579.1|EC949579
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|351042107|gb|FQ456317.1|FQ456317
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGCCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|351017433|gb|FQ435786.1|FQ435786
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110381916|gb|EC937999.1|EC937999
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|37183980|gb|CF603334.1|CF603334
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|37183445|gb|CF602799.1|CF602799
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|351028342|gb|FQ427238.1|FQ427238
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110374475|gb|EC939254.1|EC939254
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110381825|gb|EC935490.1|EC935490
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|110392524|gb|EC958004.1|EC958004
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|351025275|gb|FQ434288.1|FQ434288
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|71855580|gb|DT004635.1|DT004635
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|71859460|gb|DT008515.1|DT008515
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|71858356|gb|DT007411.1|DT007411
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|294965707|gb|GW839162.1|GW839162
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|34544508|gb|CF512740.1|CF512740
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGGATCNTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|351027331|gb|FQ444580.1|FQ444580
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|161714380|gb|FC063221.1|FC063221
EST:     GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|351016802|gb|FQ424229.1|FQ424229
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
EST: gi|352794288|gb|FQ479530.1|FQ479530
EST:     GTGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATTGGGAAG                         GTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA
genomic: GCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagtttt ... gttgatgtagGTTCCCGTGTTGGAAACACCTGATGGTCCTGTATTTGAGAGCAATGCCATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCGGAGTACAGCGGTATCAAAGTTGAACTGGTTCAGAACTTTGAGATGGGCGTCTCCAACAAGACTCCCGAGTTCCTTAAGATGAACCCTATCGGGAAGgtacagttttttaatcaaaggaaatcatctgtggtacttgtgtttaggtttttaatattctaaaaggatgttatgttgatgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG