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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAgtaagcagaacttctttggtttttcttttgaatttactttctaaaccttttgcagttattttacagtgagatagtttttaactgctttgttcag

Basic information

species Vitis vinifera
transcript Vv12s0035g01060.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G138676_T03 (Zea mays), 5'ss of exon 4
ACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAgtaagcagaacttctttggtttttcttttgaatttactttctaaaccttttgcagttattttacagtgagatagtttttaactgctttgttcag
 |||| |  ||||| || ||||||||||||||||||||||||||||| ||||| |  || |||| ||   |  ||||   |||||| |    ||   |  ||||     | |     |    | |   |  |  |  ||||||  || |     
TCTGTCACATACATCGCTGAACATGTGGTTGGAACTGGTTCTTTTGGGGTTGTGTATCAGgtaaacaacccacctttctgttttctgtactgttctatgcctaa-ttgatagtgaaaagcacataaccatttcatcattaactctttag-----

upper sequence: Vv12s0035g01060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G09840.1 (Arabidopsis thaliana), 5'ss of exon 4
ACTGTTAGTTACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAgtaagcagaacttctttggtttttcttttgaatttactttctaaaccttttgcagttattttacagtgagatagtttttaactgctttgttcag
|| || ||||||||| |||||||||| ||||| |||||||| |||||  | ||||||||||| |||  |  |    |        |  ||  ||   | | |  |  |    |  ||    | ||         ||| |   | ||||    ||
ACAGTCAGTTACATATCAGAACATGTTGTTGGTACTGGTTCCTTTGGCATGGTTTTCCAAgtgagctaatttaacataagacccatgatg--ttcgttctattgatttggctccattcccctgcac-------atttatgtttccttttggtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|156736132|gb|EV240253.1|EV240253
EST:     ACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAA                         GCAAAATGTAGAGAGACTGGAGAGATTGTCGCCATCAAGAAGGTTCTCCAA
genomic: ACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAgtaagcagaa ... ctttgttcagGCAAAATGTAGAGAGACTGGAGAGATTGTCGCCATCAAGAAGGTTCTCCAA
EST: gi|161706124|gb|FC057171.1|FC057171
EST:     ACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAA                         GCAAAATGTACAGAGACTGGAGAGATTGTCGCCATCAAGAAGGTTCTCCAA
genomic: ACATAGCAGAACATGTGGTTGGAACTGGTTCTTTTGGTGTTGTTTTCCAAgtaagcagaa ... ctttgttcagGCAAAATGTAGAGAGACTGGAGAGATTGTCGCCATCAAGAAGGTTCTCCAA