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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtccctttgtggcaattgtactttagtcttttgtgtttgttctagtgacaaatgatttaaatattgtcttgtgcag

Basic information

species Vitis vinifera
transcript Vv12s0035g00640.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G13320.1 (Glycine max), 5'ss of exon 3
CCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtccctttgtggcaattgtactttagtctttt---------gtgtttgttctagtgacaaatgat-ttaaatattgtcttgtgcag-------
 | || ||  | ||||| ||||||||||| |||||||| ||||| ||||| ||||||||||| || || || |||||||||||| |||| ||| | || |||||                  || |   ||||  |||           ||    || || | ||  |   | |  ||| ||| | | |  ||       
TCCTGTCGCCAAGGGAAGAAACTGCTTGTTCTGGATATTGATTACACTCTCTTTGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaatttcatttccccccttccttctctcttagcatttccattcaaaaatgccatttttaatcactgaaattatcgaatcttggcatctttagtccttag

upper sequence: Vv12s0035g00640.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G30160.1 (Glycine max), 5'ss of exon 3
CCATGCCGTGAGGGGAAAAAACTGCTTGTGCTGGATATCGATTATACTCTATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtccctttgtggcaattgtactttagtcttttgt-gtttgttctagtgacaaa---tgatttaaat------attgtcttgtgcag----------
|| || ||  | ||||| ||| ||||||| |||||||| ||||| ||||| || |||||||| || || || |||||||||||| |||| ||| | || |||||    | | |||    |  ||    |||  |||||| |   |   |   | ||   |   || || ||||      | || | | |  |           
CCGTGTCGCCAAGGGAAGAAATTGCTTGTTCTGGATATTGATTACACTCTCTTCGATCACCGCTCCACTGCTGAGAACCCTCTTCAACTCATGAGACCCTgtaat---ttcatttccccccttttcgttttcttcttttttcactcaattaggggatggagtttgcttaaaattacaaaaatgccatttttaatcactcaagt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110730895|gb|EE108499.1|EE108499
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|110731088|gb|EE108908.1|EE108908
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|110712069|gb|EE089270.1|EE089270
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|110362932|gb|EC926494.1|EC926494
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGACCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|110398569|gb|EC965022.1|EC965022
EST:     ATTTGATCACCGTTCAACAGCATAGAACCCTCTTGAACTAATGCGACCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|110380341|gb|EC945597.1|EC945597
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGACCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|110731285|gb|EE105571.1|EE105571
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|294966960|gb|GW839835.1|GW839835
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGACCTT                         ATCTTCACGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
EST: gi|33409794|gb|CF215421.1|CF215421
EST:     ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGACCTT                         ATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT
genomic: ATTTGATCACCGTTCAACAGCAGAGAACCCTCTTGAACTAATGCGGCCTTgtaagcagtc ... tcttgtgcagATCTTCATGAGTTTCTCTCAGCTGTATATGCTGAGTATGATATCATAATAT