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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAACAGGCACAGGCTGGGTTGGAATCAATTTCCTCATCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGgtatcttctgcttatgattttcctagaaaattcttgttgttttctatatgtgcagttattaggcttcaactcagtattaaagcattcaactttaaggactaatgtgtttacttgcttttgcctcag

Basic information

species Vitis vinifera
transcript Vv12s0034g02360.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0034g02360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G03120.1 (Glycine max), 5'ss of exon 4
GTTGAACAGGCACAGGCTGGGTTGGAATCAATTTCCTCATCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGgtatcttctgcttatgattttcctagaaaattcttgttgttttctatatgtgcagttatta-----ggcttcaactcagtattaaagcattcaactttaaggactaatgtgtttacttgcttt-----tgcctcag
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GTTGAGCAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAGGACAATAAATCAGCTTCGTGAAAACTTTGTCTCCATTGAGAAgtatgttagaaatgagatggact---gaaactgttatcacctattagagg-gtggttgttttctcttgtgtaaacttaccattgatattttttccctttggacttactttgattttctgatttcttgatgcatcag