Sequence
atgc intronic sequence ATGC exonic sequenceGCAAAGAGGAGTTCTGTTAAGCTGGATACCTACAGGAAGTTCTCAAATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgttctccagtgaagacacttgtggttttgattggcaataacattgttttactgtagtttatgtgcttaatttatattttaccatgtgaaaaaaatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0034g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G064366_T01 (Zea mays), 5'ss of exon 3
GCAAAGAGGAGTTCTGTTAAGCTGGATACCTACAGGAAGTTCTCAAATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgt--tctccagtgaagacacttgtggttttgatt--ggcaataacattgttttactgtagtttatgtgcttaatttatattttaccatgtgaaaaaaatg---
|||| |||||||||||| || |||||| ||||| |||||| ||||| | || || ||| | ||||| |||||||||| ||||| || ||||||||||| | | || || | | | || ||| | | ||| | | || | | |||| |||| | | || || | |
GCAAGGAGGAGTTCTGTGAAATTGGATATATACAGAAAGTTCACAAATGCATTGGCTGTTTCTGTGATAGCTTCAGTTGCCTGGATTGGTTATGAGgtatgcaaatttctgtaaataaatccatagtgaacattatgtctataccgccatgttcgagaaaaaaatgt-------ctatacatgaacagttgggggcatttctt
upper sequence: Vv12s0034g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G19670.1 (Glycine max), 5'ss of exon 3
GCAAAGAGGAGTTCTGTTAAGCTGGATACCTACAGGAAGTTCTCAAATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgttctccagtgaagacacttgtggttttgattggcaataacattgttttactgtagtttatgtgcttaatttatatttta-ccatgtgaaaaaaatg-----------------
||||| | |||||||||||| |||||| || ||||||||||||||| | |||||||| | ||||| | ||||||| ||||||||||||||||||| || | | | || || ||| ||||||| || |||| | || |||| || ||||| ||| |||||| ||
GCAAAACGAAGTTCTGTTAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACGGTGATCTCCTCAGTTGCTTGGATAGGATATGAGgta-------------aggc---tataattgtgtttg--aataacacctacttcttgtaatgaataactgaaattgatgttttatccaccaaaaaaaactgatatccatatttcactg
upper sequence: Vv12s0034g01090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G05370.1 (Glycine max), 5'ss of exon 3
GCAAAGAGGAGTTCTGTTAAGCTGGATACCTACAGGAAGTTCTCAAATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgttctccagtgaagacacttgtggttttgattggcaataacattgttttactgtagtttatgtgcttaatttatatttta-ccatgtgaaaaaaatg
||||| | |||||||| ||| |||||| || ||||||||||||||| | |||||||| | ||||| | ||||||| |||||| |||||||||||| | | | | | | || | || | | || ||| || |||| | || |||| || ||||| ||| |||||| ||
GCAAAACGAAGTTCTGTCAAGTTGGATATATATAGGAAGTTCTCAAATGCATTAGCAGTAACTGTGATCTCCTCAGTTGCTTGGATTGGATATGAGgtaaggcttatatttagtttattt-tatcttgcacaaaaagtagcatgtacttcttgtaatgaataactgaaattgatgttttatccaccaaaaaaaactgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30297840|gb|CB974634.1|CB974634EST: ATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGAGATGAG GTCTACTTTAAGGCAACGGATCCATTCAACGAGCGGTGGCAGAGTGCTTGG
genomic: ATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgttctc ... tttcctacagGTCTACTTTAAGGCAACGGATCCATTCAATGAGCGGTGGCAGAGTGCTTGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCAAAGAGGAGTTCTGTTAAGCTGGATACCTACAGGAAGTTCTCAAATTCTTTAGCAGTTGCAGTGATTGCTTCAGTTGTTTGGATAGGATATGAGgtatgttctccagtgaagacacttgtggttttgattggcaataacattgttttactgtagtttatgtgcttaatttatattttaccatgtgaaaaaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa