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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTCTATGACTTCAGTTCCAAAGCCATTAAAGTTTCTTCGCCCTCATTATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgacctatctggttagacattgttcattatagttttctttgtaatctctggttggacattgttggctatgatttaattcgaactctctggttgggca...

Basic information

species Vitis vinifera
transcript Vv12s0028g03130.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 3
AAGCTCTATGACTTCAGTTCCAAAGCCATTAAAGTTTCTTCGCCCTCATTATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgacctatctggttagacattgttcattatagttttctttgt---aatctctggttggacattgttg-gctatgat--ttaattcgaactctctggttgggca---
 |||||||||||||| ||||| ||||| || ||||| |||||||||||||||||  |||| ||| | | ||||||||| |||| ||| || ||| | |||||||    |||  |  |      ||   ||  | | || ||||||   |||   |  |   ||| | | | | | || |  ||||   |       |   |        
GAGCTCTATGACTTCGGTTCCTAAGCCGTTGAAGTTCCTTCGCCCTCATTATGGCACTCTTAAAACGTATTATGAAACTATGGCGGAGTCTGATTTGAAGgtatagt-tattcg--tgtgttgtggatatggt-gcttcctttgttcaaattagtattataacactatagtgttgtgttggttaacctgtctgtcttccctcaatgcag

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 3
AAGCTCTATGACTTCAGTTCCAAAGCCATTAAAGTTTCTTCGCCCTCATTATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgacctatctggttagacattgttcattatagttttctttgtaatctctggttggacattgttggctatgatttaattcgaactctctggttgg-gca-
 |||||||||||||| ||||| |||||||| ||||| ||||| || ||||||||  |||| ||  | | ||||||||| |||| ||| || ||| | |||||||      ||  ||      | | | ||  | | || ||||||      | || | | | |||||  | ||  | | ||     ||| |  |    ||| 
GAGCTCTATGACTTCGGTTCCTAAGCCATTGAAGTTCCTTCGTCCGCATTATGGCACTCTTAAGACCTATTATGAAACTATGGTGGAGTCTGATTTGAAGgtatagttattcgtgtgttgtgtggat-atggt-gcttcctttgttcaaattagtagtatagtgttgtgt-tggctaacttgtttgtctttcctcaatgcag

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGCTCTATGACTTCAGTTCCAAAGCCATTAAAGTTTCTTCGCCCTCATTATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgacctatctggttagacattgttcattatagttttctttgtaatctctggttggacattgttggctatgatttaattcgaactctctggttgggca
||| || |||||||||||||| || ||| |||||||||| || || ||||||||  |||| ||| | ||| ||||||||||||  ||||| ||||| || ||||| | |   || ||  |  |  || |  ||  || | || |||     |      |     || |||||| ||  |                     
AAGTTCCATGACTTCAGTTCCCAAACCACTAAAGTTTCTGCGTCCCCATTATGGAACTCTTAAAGCGTTTCATGAAACAATGGCTGATTCTGATCTCAAAgtatgtcatcattgatttcaagtcattaacaattcttatattggtatggcttaa--aaattacatttgctatgtttgcag--------------------

upper sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 3
AAGCTCTATGACTTCAGTTCCAAAGCCATTAAAGTTTCTTCGCCCTCATTATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgacct---atctggttagacattgttcattatagttttctttgtaatctctggttggacattgttggctatgatttaattcgaactctctggttgggca
|||||| ||||| ||||||||||| ||  | |||||||| |||||||||||||| | ||| |||  |||| ||| || |||||  || || ||||| || ||| ||  |   |  |  | || ||||  |||| |      |||| ||  | |||  |  | |    ||   || |||   | |||   |  | |        
AAGCTCCATGACATCAGTTCCAAAACCCCTCAAGTTTCTCCGCCCTCATTATGGAGTTCTTAAAGAATTTCATGCAAAAATGGCAGAGTCTGATCTCAAAgtacgatttcaaacattttaagtcatttctcatcaacaccgtcttagtcgt-tctactgagtctggatta--taagatcgcactcgtttttgcag--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71862597|gb|DT011652.1|DT011652
EST:     ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAG                         AAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA
genomic: ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgaccta ... gtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA
EST: gi|110730294|gb|EE107210.1|EE107210
EST:     ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAG                         AAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA
genomic: ATGGTGCTCTAAAATCATTTTATGAAACAATGGGGGATTCAGATCTAAAGgtatgaccta ... gtaaatgcagAAATACCTGGCAGATATACTTTCAGTGTTGGCCTTGACCATGTCAGCGGAA