Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTCTCTCTGGAACTGGTGCTTGCCGACTTTTCGCAGACTTCCAAAAGCGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAAgtgagtactcttcttatttgtttctttttatttcttcatttttgcctctggtattccttgtgcagatttagttagaaaatcagaatgatagtggatattcttatttgttgagttgttgtctgaggtgcctaacatgagatttcaacag

Basic information

species Vitis vinifera
transcript Vv12s0028g01820.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g01820.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S223_31V6.1 (Physcomitrella patens), 5'ss of exon 3
AGGCTCTCTCTGGAACTGGTGCTTGCCGACTTTTCGCAGACTTCCAAAAGCGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAAgtgagtactcttcttatttgtttctttttatttcttcatttttgcctctggtattccttgtgcagatttagttagaaaatcagaatgatagtggatattcttatttgttgagttgttgtctgaggtgcctaacatgagatttcaacag
| || || || ||||||||||| ||||| || ||||| |||||||||||||| ||   ||| || || ||| ||| ||| || || ||||| ||| | ||||  | | |    | |        || |||  ||  ||||||  |||     ||  |   |||  |   ||||     || || ||    |  |  | | |  || |||||                                     
AAGCCCTATCAGGAACTGGTGCATGCCGTCTCTTCGCCGACTTCCAAAAGCGATTCATGCCAGAGTCTCAAGTTTTTATCCCCGTTCCAACGTGGTCCAAgtatgcatttccttca--------ttcttaactca-cattttgtccttccacatctcac-tgct-accaagtttagggattagtattgatgccgtaaatttggttggttga-------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18458030|gb|BM436308.1|BM436308
EST:     CGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAA                         CCATCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTA
genomic: CGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAAgtgagtactc ... atttcaacagCCATCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTA
EST: gi|34545604|gb|CF513836.1|CF513836
EST:     CGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAA                         CCATCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTA
genomic: CGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAAgtgagtactc ... atttcaacagCCATCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTA
EST: gi|294964459|gb|GW838262.1|GW838262
EST:     CGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAAACTGGGCTAA                         CCATCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTA
genomic: CGTTTTCGGCCTGACTCCCAAATTTATATACCAGTCCCAACCTGGGCTAAgtgagtactc ... atttcaacagCCATCATAACATCTGGAGAGATGCCCAGGTCCCTCAAAGGACTTTCCATTA