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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca...

Basic information

species Vitis vinifera
transcript Vv12s0028g01600.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g45820.4 (Oryza sativa), 5'ss of exon 3
----CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca---
    ||||||| || || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| || |||||||||| || ||| | |     || |   | | ||     ||    |  |  |||||    ||      || |  | |  ||  |  |||   ||| ||     
GATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTgtgggtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaatt--ccgtgcaactattcatatctggaaatgtattctttgtag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g45820.1 (Oryza sativa), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca---
||||||| || || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| || |||||||||| || ||| | |     || |   | | ||     ||    |  |  |||||    ||      || |  | |  ||  |  |||   ||| ||     
CAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGTGGgtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaatt--ccgtgcaactattcatatctggaaatgtattctttgtag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g45820.3 (Oryza sativa), 5'ss of exon 3
----------------------------------------CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca-------------------------------------
                                        ||||||| || || |||||||| ||||||||||| || ||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| || |||||||||| || ||| | |     || |   | | ||     ||    |  |  |||||    ||      || |  | |  ||  |  |||   ||| ||                                       
CGTGGTCGGACAGCAATTTCCTCAAAGGAGATTGATGATTCAATTGACAGAATAGTGGCTGGTATGGAAGGAACTGTGATGACAGATGGGAAGAGCAAAAgtcttgttgcttaccatgaagttgggcatgcaatttgtgggtaagagataatctgcatatttgctaactgtgcttt-tgtttattacttgcatatcaaaatt--ccgtgcaactattcatatctggaaatgtattctttgtagaactttgacgcctggccacgaccctgtccaaaag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G087598_T02 (Zea mays), 5'ss of exon 2
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgcc---atgttgatatccttcttgataaggccagcagttttacttcaaaact-aatttttca
| ||||| || ||||| ||||| |||||||| || || |||||||| || |||||||| ||||| || ||||||||||||||||| ||||| || || ||||||| ||    ||| | |  | |       |     | || | |   |  |||  ||     | | | |    ||  |||||  ||     || |  | ||| 
CTATTGACAGAATTGTAGCTGGTATGGAAGGGACCGTGATGACAGACGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTTGGGCATGCAATTTGCGGgtaagagatgg-atcttcctctttgcagagcttctttcttttgtcttaacattggaatgtgattgggttaatttag--gttttgattggtttctcagatattc-

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G110408_T01 (Zea mays), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca------
| ||||| || ||||||||||| |||||||| || || |||||||| || |||||||| ||||| || |||||||||||||| || ||||| || || ||||||| ||  | ||| | |  |         | |   | || ||| ||   || |      ||||  |   |    |||   ||| |   |  ||| |||      
CTATTGACAGAATTGTGGCTGGTATGGAAGGGACTGTGATGACAGACGGGAAGAGCAAAAGTCTTGTTGCTTACCATGAAGTCGGGCATGCAATTTGCGGgtaagagatga-atcttcctcttaacagatcttttctcctttgccttgaacat-tagaatgtgattggtttaat--tttggtttcga--ttggtttctcagatatc

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G09160.1 (Glycine max), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca-------
| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| | ||||| || ||||||||||||||||| || ||||||||||     | ||   ||   |||| |   | |    |   |   |   | |   | |      ||||      |  | | |    || | || |  ||       
CTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTGATGACAGATGGGAAGAGCAAAAGTTTAGTGGCATATCATGAAGTTGGTCATGCTATTTGTGGgtaag-----aaatttggctcagtttatgtctttaagtaaatgttttaaggttg--catggaagcaaggtgttttgcctaattaggtaaatcatgtaacacttaata

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G26230.1 (Glycine max), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaac-taatttttca-
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||  | ||||| || ||||||||||| ||||| || ||||||||||  ||| |   |||   | ||| |  ||  | | ||    || | |   |         ||  |    |   || |   | |  |  |||   || | 
CTATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGGAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGgtaag--aaatttggctgttgtttttgtgtttaagtaaatgtttcaagattgcaatggaagcaatgtgttttgtctttatggctaattatgtaacacttaat

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G05820.1 (Glycine max), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca----
| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||  | ||||| || ||||||||||| ||||| || ||||||||||  |||| |||  |   |  || |   | | ||  ||     |  ||||  |  |      ||||   |   ||     |  ||| | |  || ||    
CTATTGATAGGATTGTGGCTGGAATGGAAGGAACTGTGATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGTGGgtaagccaaaa-atcagggtgtagttttgtctttcga-gttaatgtttatgattgcaatggaagcaaggt--gttattgcctatataaattcacgttacacttg

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G17070.1 (Glycine max), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagt-gaaaatatcctgccatgtttcttattctggacatt----cgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca----------------------------------------------------------------------------------
| |||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||  | ||||| || ||||||||||| ||||| || || |||||||   |||||         |||    |||  |||  ||     |    ||||  |  |  | |  ||        || || ||  | |||| ||||     |                                                                                  
CCATTGATAGGATTGTGGCTGGAATGGAAGGAACCGTAATGACAGATGGAAAGAGCAAAAGCTTAGTGGCATATCATGAAGTTGGGCATGCTATTTGCGGgtaagccaaaaatcagtaaatgtgtacgatatgatggcaatggaagcaaggtgttattgcctatataaattcatgttacacttgtatat-aaaagtaatccagaaaaaaacaatggttctcattcagaagctgttttttgtaaacaattccaaaaagttgttcttaaatacctatctgtacttgcag

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G06430.1 (Arabidopsis thaliana), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca
||||||| || ||||| ||||| |||||||||||||| ||||||||||| |||||||| ||  |||| ||||||||||||||||| |||||||||||||||||||| | |||    |   ||| |   | |  |    |    | |  || |  | | |  || |    |  ||||                        
CAATTGACAGAATTGTAGCTGGCATGGAAGGAACAGTCATGACAGATGGGAAGAGCAAAAGCTTGGTTGCTTACCATGAAGTTGGCCATGCCATATGTGGgtaagtcagaatcagattagatgatgtgtgtgttatcaaaagcctaaatttaagttcat--tgttcgttcttgcag------------------------

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G30950.1 (Arabidopsis thaliana), 5'ss of exon 3
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca
| |||||||| || || ||||| |||||||||||||| ||||| ||||| |||||||| ||  |||| |||||||||||||||||||||||  | ||||||||||||| ||   | |   |     ||   |||| | |||     | |  | | | | |||  ||| |  |  |  |||  ||    ||          
CCATTGATAGAATCGTTGCTGGCATGGAAGGAACAGTGATGACCGATGGCAAGAGCAAAAGCTTGGTAGCTTACCATGAAGTTGGTCATGCAGTGTGTGGgtaagtgagaaa--catattaaaagcctg--tctgtatattattactatcaaaaacttactt--taaagttataaactttggttttttacag--------

upper sequence: Vv12s0028g01600.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S9_115V6.1 (Physcomitrella patens), 5'ss of exon 4
CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataag-gccagcagttttacttcaaaactaatttttca------------------------
| || |||||||| |||||||| |||||||| ||  ||||||| ||||||||    ||||| || || ||||| |||||||||||||||||||| || |||||      | |  ||  |||  || |   | | |    |  | ||| ||              |||  | | |     |   || | | |||| | |                           
CCATCGATAGGATCGTGGCTGGTATGGAAGGGACCATTATGACCGATGGAAAATCGAAGAGCCTCGTAGCTTATCATGAAGTTGGTCATGCCATTTGCGGgtacccctcattcaccatcca-attgcaactgcagctgctctggcattttccctcttcctgcagtaaatgtctgtgagatgcttttatatctaagtctagtatcgatcaactttgtgtggtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30322119|gb|CD005381.1|CD005381
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|27755067|gb|CB035822.1|CB035822
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30133208|gb|CB918547.1|CB918547
EST:     GGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: GGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|225387946|gb|GO307577.1|GO307577
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|110720623|gb|EE096705.1|EE096705
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|71878458|gb|DT027513.1|DT027513
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|27578510|gb|CB001205.1|CB001205
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCCCCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|18459445|gb|BM437723.1|BM437723
EST:     AAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30127069|gb|CB912408.1|CB912408
EST:     GAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: GAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30131049|gb|CB916388.1|CB916388
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|161709720|gb|FC060186.1|FC060186
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGC
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGC
EST: gi|71880691|gb|DT029746.1|DT029746
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30134559|gb|CB919897.1|CB919897
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30125248|gb|CB910587.1|CB910587
EST:     GGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: GGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30131618|gb|CB916957.1|CB916957
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|110367326|gb|EC931256.1|EC931256
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCTGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30138067|gb|CB923405.1|CB923405
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|28966087|gb|CB345120.1|CB345120
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCTGTTCAGAAAGTCACCCTGATCCTTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|27579864|gb|CB002559.1|CB002559
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30128912|gb|CB914251.1|CB914251
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|37187954|gb|CF607305.1|CF607305
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAG
EST: gi|30134949|gb|CB920287.1|CB920287
EST:     GGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: GGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|71879483|gb|DT028538.1|DT028538
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|29785371|gb|CB342295.2|CB342295
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGAACCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|71880872|gb|DT029927.1|DT029927
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|110360382|gb|EC923440.1|EC923440
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTGGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCTGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
EST: gi|30136898|gb|CB922236.1|CB922236
EST:     AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGG                         AACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG
genomic: AAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaa ... tttcttgcagAACTTTGACCCCAGGACACGATGCCGTTCAGAAAGTCACCCTGATCCCTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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CAATTGATAGGATTGTGGCTGGAATGGAAGGAACAGTTATGACAGATGGAAAGAGCAAGAGTCTGGTGGCTTACCATGAAGTTGGTCATGCCATATGTGGgtaagtgaaaatatcctgccatgtttcttattctggacattcgccatgttgatatccttcttgataaggccagcagttttacttcaaaactaatttttca

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaactaa