Sequence
atgc intronic sequence ATGC exonic sequenceAGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTGAACATAAGTATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtatttaacccgtgtatatattttagaccaacgttaaaagggcttatgtgcatgtttctctgaactccattgtttgtccatttttccccaccaaca...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G32260.1 (Glycine max), 5'ss of exon 2
AGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTGAACATAAGTATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtatttaacccgtgtatatattttagaccaacgttaaaagggcttatgtgcatgtttctctgaactccattgtttgtccatttttccccaccaaca-
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AGGCAAAGTGCTTAATGAACTGTGAAGTTGCATTGATTCTTGAGCACAAGTATGAGCAGCTTCAACAGACATCCGATGATCCCATGAATCAAGTTTCTCAgtgagt-taaattccttatcaagttcatggttatttaacacaaagatcctggtataatgttttctgatgctcttggaataattagtttttattacaatttg
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G09890.1 (Glycine max), 5'ss of exon 2
AGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTGAACATAAGTATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtatttaacccgtgtatatattttagaccaacgttaaaagggcttatgtgcatgtttctctgaactccattgtttgtccatttttccccaccaaca--
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AGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGAGCACAAGTATGAGCAGCTTCAACAGACATCTGATGATCCCATGAATCAAATTTCTCAgtgagt--taaattctttaccaagttcatcattatttgacacaggtcctagaataatgatttctgatgcccaaggaataattaattttttttcatgattggc
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G22220.1 (Glycine max), 5'ss of exon 2
AGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTGAACATAAGTATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtatttaacccgtgtatatattttagaccaacgttaaaagggcttatgtgcatgtttctctgaactccattgtttgtccatttttccccaccaaca-
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AGGCAAAGTGCTTAATGAACTGTGAAGTTTCATTGATTCTTGAGCACAAGTATGAGCAGCTTCAACAGACATCCGATGATCCCATGAATCAAGTTTCTCAgtgagt-taaattccttatcaagttcatggttatttaacacaaaggtcccggtataatgttttctgatccccttgggataattagtttttatcacaattgg
upper sequence: Vv12s0028g01400.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G09920.1 (Arabidopsis thaliana), 5'ss of exon 2
AGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTGAACATAAGTATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtatttaacccgtgtatatattttagaccaacgttaaaagggcttatgtgcatgtttctctgaactccat-tgtt-tgtccatttttccccaccaaca--------------------------------------
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AGGCAAAGTGCTTAATGAACTGTGAAGTCTCTTTGATTCTTGAGCACAAGTTTGAACAGCTTCAGCAAATCTCAGAGGATCCTATGAATCAAGTTTCTCAgtaagtataattgtgtttcatagagattcattgtatattagccatcatgaattgaagaatttagtcagttttatatgttacttctaggttagtgaatcaatgttgaatattgttgaagaagttatgtttgctccttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110419235|gb|EC985447.1|EC985447EST: TATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCA AGTATTTGAAAAGTCCCTACAGTATGTGAAGCGCTTCAGCCGGTATAAGAA
genomic: TATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtattt ... cccacttcagAGTATTTGAAAAGTCCCTACAGTATGTGAAGCGCTTCAGCCGGTATAAGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGCCAAATGTTTGATGAATTGTGAAGTAGCTGTTATTCTTGAACATAAGTATGAACAGCTTCAGCAGATGTCTGATGATCCATTAAATCAAGTTTCTCAgtgagtatttaacccgtgtatatattttagaccaacgttaaaagggcttatgtgcatgtttctctgaactccattgtttgtccatttttccccaccaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccacc