1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGGCCAGACAGCATGGGGTTTGGCCCTCTTGTTCCAACTGAAACCGAAAGGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatacatcaatttcattgtattgcttatatgaatccaataaggataatcaaatccggttttcag
species | Vitis vinifera |
transcript | Vv11s0118g00800.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAG GGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAEST: gi|351026924|gb|FQ436577.1|FQ436577
genomic: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGA
EST: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAG GGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAEST: gi|110403174|gb|EC964453.1|EC964453
genomic: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGA
EST: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAG GGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAEST: gi|110712932|gb|EE088409.1|EE088409
genomic: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGA
EST: GGCCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAG GGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGAEST: gi|110711490|gb|EE088027.1|EE088027
genomic: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGA
EST: GGTCCTTGATGGAGCGTGTCAGGCAAGAATTGAAGCATGAGCTCAAACAG GGATACAAGGAAAA-ATTGTGGGAC-TTANAGAGGAA-TTCTTCTTAAGAAEST: gi|110712547|gb|EE090292.1|EE090292
genomic: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGG-ACATTAGAGAGGAAATTCTTCGTAAGAG
EST: GTCCTTGATGGAGCGTGTCTGGCAAGAGTTGAAGCCTGAACCTCAA-CGG GGATACAAGGAAA-GATTGGGGGAC-TTAGAAAGGGAATTCTTCGEST: gi|32270192|gb|CD719351.1|CD719351
genomic: GTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGC-TCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGG-ACATTAGAGAGGAAATTCTTCG
EST: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAG GGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGA
genomic: GGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatac ... cggttttcagGGATACAAGGAAAAGATTGTGGACATTAGAGAGGAAATTCTTCGTAAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGCCAGACAGCATGGGGTTTGGCCCTCTTGTTCCAACTGAAACCGAAAGGTCCTTGATGGAGCGTGTCAGGCAAGAGTTGAAGCATGAGCTCAAACAGgtaagcatacatcaatttcattgtattgcttatatgaatccaataaggataatcaaatccggttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA