Sequence
atgc intronic sequence ATGC exonic sequenceCAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggcttcactgtctaatcacattcatgtaatgggtctatcaatttgtggttgttg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g09130.1 (Oryza sativa), 5'ss of exon 3
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggcttcactgt----ctaatcacattcatgtaatgggtctatcaatttgtggttgttg--------------------------------------
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CAGCACAGTATGGTCAAACATCATATCTTTATCATATTGTTGCAAAATGGAATGCTGATCCTGATGTCCCTGATAATGATGGAAGAAGTCCTCTCCACTGgtttgt-acctttcccctgtacattttttttcaaagttcaaacacaagccttgtggtattctttatttttgtcacttaatgtgttgtctaacatggcttcatggtgcccctattgatgattcaatattgttcacatttccag
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 5'ss of exon 3
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgttttg-----attgttgaaaagtagtatatgaaagtaggcttcactgtctaatcacat--tcatgtaatgggtctatcaatttgtggttgttg---------------------------------------------------
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CAGCGCAGTATGGCCAGACAGCATTTATTTATCATATTGTTGCGAAGTGGAATGCTGATCCAGATGTCCCTGATAATGATGGAAGAAGCCCACTGCACTGgtttgtaccttgttctctacatttatcattatcttatgttgcactggagtagtagtttctaccagtgcacttagtaatgca-tgtccccataaaccttcagtgccccttatatttctttctctctctctctgtttttttttggcatattaccttgtag
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G087806_T01 (Zea mays), 5'ss of exon 3
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgt--------gtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggcttc-------actgtctaatcacattcatgtaatgggtctatcaatt-tgtggttgttg------------------
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CAGCACAGTATGGTCAGACTGCATTCATTTACCACATTGTTGCAAAATGGAATGCTGATCCAGATATCCCTGATAATGATGGAAGGAGCCCTTTACACTGgtttgtacttgtgttatatgtttctcatttgcctccttgtaatttctgcttgtgcactttgtagaatactgccctgctgaatttaaacatcttgctgcttatttctctctctgtttttacatattctcttctag
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G024437_T01 (Zea mays), 5'ss of exon 3
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgt--------gtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggcttcactgtctaatcacattca------tgtaatgggtctatcaatttgtggttgttg-------------------
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CAGCACAGTATGGTCAGACTGCATTCATTTACCGCATTGTTGCGAAATGGAATGCTGATCCAGATATCCCTGATAATGATGGGAGGAGCCCTTTACACTGgtttgtgcttgtgttgtatatttctcatttgcctctttgtaatttctgcttgtgcactttgtaacatactgcccttctgaattttaacatttttctgcttatttctctctgttttttgcatatttctttctag
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G23230.1 (Glycine max), 5'ss of exon 4
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggctt-cactgtctaatcacattcatgtaatgggtctatcaatttgtggttgttg-
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CTGCACAATATGGTCAGACAGCTTTCCTTTACCACATTGTTTCAAAATGGAATGCTGACCCTGATGTTCCTGATAATGATGGAAGAAGCCCATTGCATTGgta-atcaacaatttgcagctcaacctttctttctattgaaatggatgttttcccttttctatttgttgcactctgctctgcagtcaagcgcccatt-ttgt
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G11600.1 (Glycine max), 5'ss of exon 3
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggctt--cactgtcta---atcacattca----tgtaatgggtctatcaatttgtggttgttg
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CTGCACAATATGGTCAGACAGCTTTCCTTTACCACATTGTTTCAAAATGGAATGCTGACCCTGATGTTCCTGATAATGATGGAAGAAGCCCCTTGCATTGgta-atcaacaatttgccgctcaacctttctttctattgaaatggatgttttcccttttctatttgttgcactctgctctgcagtgaagcccccattttgt--------
upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 5'ss of exon 3
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgt--tttgattgttgaaaagtagtatatgaaagtaggcttc-actgtctaatcacattcatgta-atgggtctatcaatttgtggttgttg
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CCGCACAGTATGGCCAGACTGCTTTTCTTTGTCACGTTGTCTCAAAGTGGAATGCTGATCCTGACGTGCCTGATAATGATGGAAGAAGCCCCTTGCATTGgtatgcttgctgcaaagcttgccttcgtgaaattgttacttagtaattggtttttggcttctttttattttttcttacaattgtttagccttgcacgctt----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|161721152|gb|FC071027.1|FC071027EST: AATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTG GGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGA
genomic: AATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacc ... agaattgtagGGCTGCTTATAAAGGTTTTGCCGATTGTATACGTCTTCTTTTATTTCTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAGCACAATATGGTCAAACTGCTTTCCTATACCACGTTGTTACAAAATGGAATGCTGATCCTGATGTTCCTGATAATGATGGAAGAAGTCCTTTACACTGgtgtgttacctatgttttgattgttgaaaagtagtatatgaaagtaggcttcactgtctaatcacattcatgtaatgggtctatcaatttgtggttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagta