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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACTCAGACGAGCCATTAGCTTTTACTCAACCATTCAGGCACATGATGGTCACTGGCCTGCTGAGTCTGCTGGCCCCTTGTTTTTTCTTCCTCCTTTGgtacatctcaatgttctttattttgttctcaatttcttcatcaattggtataacgctttaggtacttgggttgacattagtttttctcattttttgacta...

Basic information

species Vitis vinifera
transcript Vv11s0065g00030.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0065g00030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G03060.1 (Glycine max), 5'ss of exon 2
TACACTCAGACGAGCCATTAGCTTTTACTCAACCATTCAGGCACATGATGGTCACTGGCCTGCTGAGTCTGCTGGCCCCTTGTTTTTTCTTCCTCCTTTGgta--catctcaatgttctttattttgttctcaatttcttcatcaattggtataacgctttaggtacttgggttgacattagtttttctcattttttgacta
|||| | |||   || || |  || || ||  | ||||| || |||||||| |||||||| || || ||||||||||| |||||||| ||||  ||||||||   ||| |  |  |||   ||||| ||| |  ||  |  |    || | |  |   ||    |||||    |||   || |    || |  || |   | 
TACAATGAGAAAGGCTATCAATTTCTATTCCTCTATTCAAGCCCATGATGGCCACTGGCCAGCAGAATCTGCTGGCCCTTTGTTTTTCCTTCAACCTTTGgtgagcatgttcaatttcagcatttttttcccctttcatgaaaggctttgcactaatgttattttactttttctgaa--tactaccacttaagttgtaggtt

upper sequence: Vv11s0065g00030.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G33450.1 (Glycine max), 5'ss of exon 3
TACACTCAGACGAGCCATTAGCTTTTACTCAACCATTCAGGCACATGATGGTCACTGGCCTGCTGAGTCTGCTGGCCCCTTGTTTTTTCTTCCTCCTTTGgtacatctcaatgtt--ctttattttgttct--caatttcttcatcaattggtataacgctttaggtacttgggttgacattagtttttctcattttttgacta
|||| | ||| | | ||| || || || ||| | ||||| || |||||||| ||||||||||| || || |||||||| |||||||| ||||  ||||||||     ||||  |   | | |||||||| |  |  || |||  | ||||| | |   || |  |||  |    |||| ||| |   || | || | |  |   
TACAATTAGAAGGGGCATCAGTTTCTATTCATCAATTCAAGCCCATGATGGGCACTGGCCTGCAGAATCAGCTGGCCCTTTGTTTTTCCTTCAACCTTTGgtgagcttcaaattcaacataattttgtttttccctttccttttttaattgat-tggagcct--ggttttaacattgatatttggaattataatgtatatag--