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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGCAAGTCTGGTCAGTCGAAATGATGGTATTGTTATCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAGgtaccatatcccatgcttatgcacttgaaataagcataaacctttaataacctttgagtccttaaagattactaaaactagttacatattactaacggattatgtgtatttcatcacag

Basic information

species Vitis vinifera
transcript Vv11s0052g01560.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110695482|gb|EE073547.1|EE073547
EST:     TCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAG                         CCTTAACATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGC
genomic: TCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAGgtaccatatc ... ttcatcacagCCTTAACATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGC
EST: gi|110713012|gb|EE088559.1|EE088559
EST:     TCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAG                         CCTTAACATATATGTAATACTTTATATGATATTCCTTGGAATTAGTGGCGC
genomic: TCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAGgtaccatatc ... ttcatcacagCCTTAACATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGC
EST: gi|110708165|gb|EE085398.1|EE085398
EST:     TCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAG                         CCTTAACATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGC
genomic: TCTGGTCTGCTTCCTAATCCAAAGCTTGAGACATCAGTTCTATCAATCAGgtaccatatc ... ttcatcacagCCTTAACATATATGCAATACTTTATATGATATTCCTTGGAATTAGTGGCGC