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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCAATATTCTATTCCTTGACTCCCCTGTTGGAGTTGGCTTTTCATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttctttaacccttttgtatatgattatcctggtccaaagtatatgctgtgattgctatgctaatgcttgtgcatctaattgtcatttgttcttcag

Basic information

species Vitis vinifera
transcript Vv11s0037g00740.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351031227|gb|FQ445252.1|FQ445252
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351014120|gb|FQ434709.1|FQ434709
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAAGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351012141|gb|FQ426863.1|FQ426863
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351030034|gb|FQ430776.1|FQ430776
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|349826488|gb|FQ418579.1|FQ418579
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|349823897|gb|FQ415308.1|FQ415308
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|349826481|gb|FQ418572.1|FQ418572
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|29785430|gb|CB342413.2|CB342413
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGCTTGAGCGTTTTCCGCAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351013201|gb|FQ424906.1|FQ424906
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|110687957|gb|EE065957.1|EE065957
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGCTTGAGCGTTTTCCGCAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351022559|gb|FQ447081.1|FQ447081
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|161715943|gb|FC068750.1|FC068750
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCAT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCAT
EST: gi|351013501|gb|FQ425532.1|FQ425532
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|110685326|gb|EE063617.1|EE063617
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGCTTGAGCGTTTTCCGCAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|349826544|gb|FQ418635.1|FQ418635
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|18459529|gb|BM437807.1|BM437807
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGCTTGAGCGTTTTCCGCAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351013562|gb|FQ425593.1|FQ425593
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351025963|gb|FQ427975.1|FQ427975
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351016943|gb|FQ424370.1|FQ424370
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351014108|gb|FQ434697.1|FQ434697
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351038161|gb|FQ460853.1|FQ460853
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAGGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351042964|gb|FQ434405.1|FQ434405
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|110358895|gb|EC919479.1|EC919479
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351040083|gb|FQ425169.1|FQ425169
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|110697944|gb|EE075394.1|EE075394
EST:     ATATTCAAATACTTCTTCAGATGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCTGCAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|349823430|gb|FQ423241.1|FQ423241
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|77581072|gb|DV219461.1|DV219461
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT
EST: gi|351019440|gb|FQ429575.1|FQ429575
EST:     ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTG                         CTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCACAGT
genomic: ATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttcttt ... tgttcttcagCTAAGGACTCATTAGCATTTTTGTTAAAGTGGTTTGAGCGTTTTCCGCAGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCCAATATTCTATTCCTTGACTCCCCTGTTGGAGTTGGCTTTTCATATTCAAATACTTCTTCAGACGTGTCAACAAATGGAGATATAAGGACTGgtatttctttaacccttttgtatatgattatcctggtccaaagtatatgctgtgattgctatgctaatgcttgtgcatctaattgtcatttgttcttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT