1 5' 3' | 2 5' 3' | 3 5' 3' |
GACCTTGTTTCCTGGTATATCAGATCAGTCCCTCCTGGATGTATACACTGCAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAGgtacaagtcttatgctctaaaagaaaaattttaattatttaattgaccatctttttataggtaatgaataatgttaattggtaagggcaatatcacttgg...
species | Vitis vinifera |
transcript | Vv11s0016g04410.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAG TTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGTEST: gi|22011084|gb|BQ796118.1|BQ796118
genomic: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAGgtacaagtct ... gaatatgcagTTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGT
EST: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAG TTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGTEST: gi|110723373|gb|EE100611.1|EE100611
genomic: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAGgtacaagtct ... gaatatgcagTTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGT
EST: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAG TTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGTEST: gi|110691180|gb|EE068986.1|EE068986
genomic: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAGgtacaagtct ... gaatatgcagTTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGT
EST: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAG TTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGT
genomic: CAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAGgtacaagtct ... gaatatgcagTTCTACCCTGTTGATGCTCGCAGACATCTTCCAGAGAGCTTGGACATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACCTTGTTTCCTGGTATATCAGATCAGTCCCTCCTGGATGTATACACTGCAAATGGTGGTGACTTGGAAGCATCTATCGATATGCTGAACCAACTTGAGgtacaagtcttatgctctaaaagaaaaattttaattatttaattgaccatctttttataggtaatgaataatgttaattggtaagggcaatatcacttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agggcaa