Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAGgttttttttttttaaattgcacattttatattcaactgtctgttggatagatcatagttgaccatggtttctaatcag

Basic information

species Vitis vinifera
transcript Vv11s0016g04290.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g39344.1 (Oryza sativa), 5'ss of exon 3
GAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAGgttttttttttttaaattgcacattttatattcaactgtctgttggatagatcatagttgaccatggttt-ctaatcag-----------------------
| |||||||||||||| ||||  || ||||||||||||||||| |  ||||| |||||||| |||||||||   |||   || |    ||||  ||   | | |   ||  | || ||||| ||        |||  |  |||                        
GGATGGATATTAAGGGTGTTGCAGCAGAAATTCAAAAGGACAAGAGCACACCACTTGTGCAAAAGgtttttacctttgtcat-gtgtgtttttgatctgattttacttttaa-agctcatatttcttttctatttgttgttcaacagtttatgtgacagtataacgg

upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G04460.1 (Glycine max), 5'ss of exon 3
GAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAGgtttt------ttttttttaaatt---gcacattt-tatattcaactgtct-gttggatagat-catagttgaccatggtttcta-atcag---------
| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | ||||||||||| |       ||| ||||||  |   |   |||   |||      | ||  |||| |  | | | |  |||   ||| | | |  |||           
GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatattatttgttttaacctcaagtgtattaacatacatgcttatccagttgtactggtacttcattggatatgttgtttgcatctttgtcaacat

upper sequence: Vv11s0016g04290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G35260.1 (Glycine max), 5'ss of exon 3
GAATGGATATTAAGGGGGTTGTTGCTGAAATTCAAAAGGACAAAACTACACCTCTTGTGCAGAAGgttttttttttttaaattgcacatt--ttatattcaactgtctgttggatagatcatagttgaccatggtttctaatcag--------------------
| ||||||||||| ||||||||||||||||| |||||||||||||  || ||| | ||||||||||| |  | || ||   ||  || |    | |||| |  |   || |       |  || |||  |||  ||    ||                       
GTATGGATATTAAAGGGGTTGTTGCTGAAATACAAAAGGACAAAAACACTCCTTTAGTGCAGAAGgtctcatattatttgttttaacctcaagtgtattaatatacatgcttatccagttgtatttgtacatcattggatatgttgtttgcatctttgtcaacat