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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCTCTCACTCCCGCACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcagcatcttgaactcagtcttttgcagtaatttaagaatcaagaaaatgaaatttatgacataatgttttttcttttgttccacacag

Basic information

species Vitis vinifera
transcript Vv11s0016g03660.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g03660.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G09270.3 (Glycine max), 5'ss of exon 3
ACGGTATGGGGCAAGAAATCACAAATCCTTCATGGAAGCTCTCACTCCCGCACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgtt---cagcatcttgaactcag-----tcttttgcagtaatt-taagaatcaagaaaatgaaatttatgacataatgttt--tttcttttgttccacacag
 |||  |||   | | || | |||||||||||| || ||| ||  | |||||  || ||||||| ||||| ||||||||| | || || ||||||||||||||||||    |   ||||   ||  |     ||| ||| | |  ||     |||| ||||  ||   || | ||| |||  |||  | | |||  ||| |  |||
TCGGCCTGGACAAGGGAACCTCAAATCCTTCATTGATGCTTTCTTTACCGCATGTACTTGTGGCGACCATTTCTTCATTCCTTTTTGGATACCATCTTGGgtttgtttcctaatttcttcttcttggtgcactctcttggattccttgctttaatctagaatctg---ttgaagacttaaattttgatctttttcattctattcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712692|gb|FC062264.1|FC062264
EST:     TTCATTCTTGTTTGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: TTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|110723682|gb|EE101272.1|EE101272
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|71881826|gb|DT030881.1|DT030881
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|71860519|gb|DT009574.1|DT009574
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGCAACAATTGCTTT
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTT
EST: gi|71861991|gb|DT011046.1|DT011046
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
EST: gi|161714953|gb|FC064236.1|FC064236
EST:     CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGG                         GGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG
genomic: CACATAATTGTGGCAACCATATCTTCATTCTTGTTCGGTTACCATCTTGGgtttgttcag ... ttccacacagGGTAGTGAATGAACCCCTTGAAACAATTGCTTTAGATCTTGGTTTTAGTGG