Sequence
atgc intronic sequence ATGC exonic sequenceTGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAGgtaagaaacacaacaactcagtagaacaactccctctctctctctctcatacacaaacacacatgttactagctagcaattgtctttcttgattgtccat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G09180.3 (Glycine max), 5'ss of exon 2
TGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTTCTCC---AACCCAGCCTACCTTCAAGgtaagaaacacaacaactcagtagaa----caactccctctctctctctctcatacacaaacacacatgt-tactagctagcaattgtctttct-tgattgtccat
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TGCAACAGCACTGCAGCTGGTGGGGCACTCAAGAAAGCTAGGGTTCAACCCTCTGCTACAACGCAGACTACGTTCAAGgtaaaatgca-aactaccaggcagaagcttccaacccccaactctctatcaggcataaaagcacacataagcacacacaaacacatgtgggggtgtaattg-----
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G04110.1 (Glycine max), 5'ss of exon 3
---TGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAGgtaa-------gaaacacaacaactcagtagaacaactc--cctctctctctctctcatacacaaacacacatgttactagctagcaattgtctttcttgattgtccat
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TGTAATAGCAGTACTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAGTCGACCTTCAAGgtattttcatcgattgcaaacaaatacacagaaacttccaacctcgaacactttttcaggcaaaccaacacacataacc-gcacacaaacatcacatgtgt--------
upper sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G35610.1 (Glycine max), 5'ss of exon 3
TGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAGgta---agaaacacaacaactcagtaga--acaactccctctctc-----tctctctcatacacaaacacacatgttactagctagcaattgtctttcttgattgtccat
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TGTGATAGCGCTGCAACTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACTCAATCGACCTTCAAGgtattttcatcgattgcaaacaattagacagaaacttccaacctcgaacacttttttcaggcaaaccaacacacataacc-gcacacaaacatcacatgtg---------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71871899|gb|DT020954.1|DT020954EST: CACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAG GTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTA
genomic: CACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAGgtaagaaaca ... ttggaatcagGTGAGGAAGGAAAAGTTAGGTGACAGAATTACAGCCCTTCACCAGCTAGTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAACAGCACTGCAACTGGTGGGGCACTTAAGAAAGCTAGGGTTCAAGCTTCTCCAACCCAGCCTACCTTCAAGgtaagaaacacaacaactcagtagaacaactccctctctctctctctcatacacaaacacacatgttactagctagcaattgtctttcttgattgtccat
- - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctctc