1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AAGGGAACTGGGTTTTACTTTCTCATTTCCAGTTAGACAATCATCAATTTCATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatcctagttaccttgatccttgtttgcaatctaatattgatcctgccattctcttctccagttgtttttttttttttttcccccttaaattattga...
species | Vitis vinifera |
transcript | Vv11s0016g03070.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCG GTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCCTGGAAAGAATTGGTEST: gi|161713800|gb|FC063788.1|FC063788
genomic: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatccta ... catgttatagGTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
EST: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCG GTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGTEST: gi|161712030|gb|FC060046.1|FC060046
genomic: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatccta ... catgttatagGTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
EST: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCG GTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGTEST: gi|294965564|gb|GW837163.1|GW837163
genomic: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatccta ... catgttatagGTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
EST: ATCGGGCTCCCTCATTGAAATGGACAAAGGGATTCTCAATAGAACACGCG GTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGTEST: gi|110377656|gb|EC942735.1|EC942735
genomic: ATCGGGCTCCCTCATT-AAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatccta ... catgttatagGTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
EST: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCG GTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGTEST: gi|110723174|gb|EE100188.1|EE100188
genomic: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatccta ... catgttatagGTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
EST: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCG GTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
genomic: CATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatccta ... catgttatagGTTGGACAAGATGTAGTGGGAGAATTAACGAAAGCCATGGAAAGAATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGGAACTGGGTTTTACTTTCTCATTTCCAGTTAGACAATCATCAATTTCATCGGGCTCCCTCATTAAATGGACAAAGGGATTCTCAATAGAAGACGCGgttaatcctagttaccttgatccttgtttgcaatctaatattgatcctgccattctcttctccagttgtttttttttttttttcccccttaaattattga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccccct