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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTTTGATGCTCTCAAAACTTATGTTCCTGAAATGGTAGAGCTTCTTATTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatcaccatgattgtcgactatcagttttcatgcttgcagatgcttgtattgaagctgcattctgccttctgtag

Basic information

species Vitis vinifera
transcript Vv11s0016g02870.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g02870.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G36040.1 (Glycine max), 5'ss of exon 3
CACCTTTGATGCTCTCAAAACTTATGTTCCTGAAATGGTAGAGCTTCTTATTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatca--ccatgattgtcgactatcagttttcatgcttgcagatgcttgtattgaagctgcattctgccttctgtag
||| ||||||||| | || || ||||||||||||||||| || || ||| |||||| ||| ||||| || |  |||||||| |||||||| |  || ||||||   |  ||  |      |  |    |  | |  |  |  |   || | ||  || | |   |||| | |   | | |   
CACTTTTGATGCTTTGAAGACCTATGTTCCTGAAATGGTGGAACTGCTTGTTGATTGTGTCAGGAATCCTGTTTTCCTTGATTGGGAGGTTAACGAGCAGgtacctttccaatctccatctccctgtcaagaatgcttttagtcatagcttctcttactaatattgcaat-tatatgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|352781877|gb|FQ469174.1|FQ469174
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: gi|71879335|gb|DT028390.1|DT028390
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: gi|71879768|gb|DT028823.1|DT028823
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: gi|71878964|gb|DT028019.1|DT028019
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: gi|77587546|gb|DV222937.1|DV222937
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: gi|352763499|gb|FQ473202.1|FQ473202
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAAATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
EST: gi|46917512|gb|CN546841.1|CN546841
EST:     TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAG                         CTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC
genomic: TTGATTCTGTGAGGAACCCCGCATTCCTTGACTGGGAGGTCAGTGAACAGgtaagatatc ... ccttctgtagCTTGAAAAGGTGAAAGCTGAGATTGGAGAAGCTTCCAACAATCCTCAAGGC