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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGTGGCTATAGGAGAGATCTTGAGATGATGGATCATCCTGTTAGAACACATCCTGAGTTCCGGTATAAAACAGAGTTTCAAAGTCACGAACCTGAGgtatttacttttctgtgttgctaacactctaatcattgtagttttcacggatttgtatttttttcttactaaatctagactattcgttcatttccag

Basic information

species Vitis vinifera
transcript Vv11s0016g02550.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30134123|gb|CB919461.1|CB919461
EST:     CACATCCTGAGTTCCGGTATAAAACAGAGTTTCAAAGTCACGAACCTGAG                         TTTGATTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAATAAGATTAGA
genomic: CACATCCTGAGTTCCGGTATAAAACAGAGTTTCAAAGTCACGAACCTGAGgtatttactt ... tcatttccagTTTGATTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAATAAGATTAGA
EST: gi|27755257|gb|CB036012.1|CB036012
EST:     CACATCCTGAGTTCCGGTATAAAACAGAGTTTCAAAGTCACGAACCTGAG                         TTTGATTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAATAAGATTAGA
genomic: CACATCCTGAGTTCCGGTATAAAACAGAGTTTCAAAGTCACGAACCTGAGgtatttactt ... tcatttccagTTTGATTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAATAAGATTAGA
EST: gi|71860554|gb|DT009609.1|DT009609
EST:     CACGAACCTGAG                         TTTGATTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAATAAGATTAGA
genomic: CACGAACCTGAGgtatttactt ... tcatttccagTTTGATTATCTCAAGAGTTTGGAAATAGAGGAGAAAATCAATAAGATTAGA