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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGgtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtgatgtgtatcttatttgaaataaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g01930.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G07520.1 (Glycine max), 5'ss of exon 3
TATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGgtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtgatgtgtatcttatttgaaataaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcag
||||||||||| |||| |  ||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||  | ||    |||| |  |   |||          |  |  | |  ||| |   || |  | | |||||||         |||          |||     | |||  |  | | ||        
TATGGTTGGTTGATCAAGTATGGCTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCTCTCTTCATGTGCTGgta-tgtttgatgaa----tcccctgaagagtat----------actatgctttgtgtatccattttgaggattaaatcttaaattgtcatttgacattctggaacgatatctatgcttcgttttcag------

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G16560.1 (Glycine max), 5'ss of exon 3
TATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGgtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtgatgtgtatcttatttgaaataaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcag
||||||||||| ||||   |||| ||||||||||| ||||| ||||||||||| ||||| ||||| ||||| ||||||||  |  |||    ||||||       ||  | || |  |   |||  |  ||   || || ||  | |   || | ||    |  ||  ||  ||                                  
TATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGCTCAAAGTCATTGAGAGACTGGCCCCTCTTCATGTGTTGgtaatgagtg-taatgaattccctaaagaattaactatgtactatgtaattattctgaa-atgttgttcaaca-gtatgtggttgtgcacttggtttgcag---------------------------------

upper sequence: Vv11s0016g01930.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G06120.1 (Glycine max), 5'ss of exon 3
TATGGTTGGTTAATCAGGGCTGGTTTTTGGTTTAGTTCAAAATCATTGAGAGATTGGCCACTCTTTATGTGCTGgtaatgtttcctaaacgcttcccttttattctatttgtgaaagaatcaatcgtgatg-tgtatcttatttgaaataaatctagtccacctattaattgacacagaataccttttattttctggtctctcatgcag
||||||||||| ||||   |||| ||||||||||||||||| ||||||||||| ||||| || || ||||| ||||||||  |  | ||   ||||||| |    ||  |||| |      ||| ||  ||  |  |  |  |||||||     | ||  | |  |   | |        | |  ||  ||| | |             
TATGGTTGGTTGATCAAATCTGGCTTTTGGTTTAGTTCAAAGTCATTGAGAGACTGGCCCCTTTTCATGTGTTGgtaatgagtgatgaa---ttcccttgtggattaactgtgtactgtgtaattgttttgacggttgcttcttgaaatg----ttgtttaacagtatgtggttg-----tgcgcttggtttgcag-------------