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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttgtggcaaaatttccatcaactgcaatattcttttgacagtatgagtatatgatgcat...

Basic information

species Vitis vinifera
transcript Vv11s0016g01920.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G16570.1 (Glycine max), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcatt----cttaaaccctaaatccattcttattgttttcacttttgtggcaaaatttccatcaactgcaatattcttttgacagtatgagtatatgatgcat
 ||||| |||||||| |||||||| ||||  || ||| |||| || |||||||| |||||||| || ||||||||||| || |||||||| |||||||||||  ||    ||| ||   | | |  ||| || ||||| |   ||    |  | |  | |  |   || |   ||| |||| |    ||| ||| | | |    
GTTTGATATGCTGCGCAGACAGTCACTTCTGCCAGATCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGgtacttttcactttaattattactaaattttt-ttgttgttttttacaagtaatacctacacttgtctacgg-atttttttaaattgatgtgtaaacgttcg--

upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G18760.3 (Glycine max), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttt--tcacttttgtggcaaaatttccatcaactgcaatattcttt-tgacagtatgagtatatgatgcat
|||||| |||||||| |||||||| ||||| || || ||||| || |||||||| |||||||| || ||||||||||| || || ||||| || ||||||||  ||  |||| | ||   |  || ||| ||     | |||  |  |      | |  || |  || |||   |    |  | ||||   | ||   ||   
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgttctttctaaatcatattccttttgttaatgaagaattactgattggatttcttgtttatgatatgtaatgccccacgtttctgtatttttgtacattg---

upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G06110.1 (Glycine max), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttgtggcaa--aatttccatcaactgcaatattcttttgacagtatgagtatatgatgcat
 ||||| ||||||||  ||||||| ||||  || ||  |||| || |||||||| |||||||| || ||||||||||| || ||||||||||||||||||||   | || ||  |  ||  |||| |  |  ||||||||||  |    |  |||          |   |||   |  || |   |   || ||||     |
GTTTGATATGCTGCGCCGACAGTCACTTCAGCCAGACCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTCAAGGATCAGgtaccttttcaattcacaactcatt-tagtacttttcactttaattattactaatactttatgtttttgataag-taatgcctacacttgtctatggatttt

upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G07530.3 (Glycine max), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttg-tggcaaaatttccatcaactgcaatattcttttgaca-gtatgagtatatg-atgcat
|||||| |||||||| |||||||| ||||| || || || || || |||||||| |||||||| || ||||||||||| || || ||||| || ||||||||  || ||||  | ||      || || ||  ||| |   ||  || |   | ||        ||  || |  |    ||| || |  |||| |   | |||
ATTTGATATGCTGCGCAGACAGTCACTTCGGCCAGACTATATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGTGGTTTTAAAGATCAGgtgctttttaattcata---ttctttttgttaattttataattactgactggacttgttgtttttgatatgtaatgcccacacgtttctgtatttttgtacat

upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G72730.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttgtggcaaaattt--ccatcaactgcaatattcttttgacagtatgagtatatgatgcat
 |||||| || | || ||||| ||||| ||| |||||   || |||||||||||  | |||||||| ||||||||||||||||| |||||||||||||||||      |           ||||||  ||| | ||    | | ||  |||||     |||    |   ||| | |  |  |  | | ||            
CTTTGACTTGTTACGCAGACAATCCCTCCGTGCTGATGCAATCAAAATGTTTGTTCTTGATGAAGCTGATGAAATGCTCTCTCGTGGTTTCAAGGATCAGgtttaatcttgtttaatctcccattcacattttctttttctctctgataaaatcaagtcatttgttcttataatttgatttctctgtcag------------

upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G54270.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtc-attcttaaaccctaaatccattcttattgttttcacttttgtggcaaaatttccatcaactgcaatattcttttgacagtatgagtatatgatgcat
 |||||||||||  ||||||| || || || ||||| | ||| || ||||||||  | |||||||| |||||||||||||| || |||||||||||||||||   || |      | || |       ||   | |    || | |   | | |  |       ||   | || | | |  | | ||              
TTTTGACATGCTTAGAAGACAATCTCTCCGCCCTGACTGCATCAAGATGTTTGTCCTTGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGATCAGgtttgttatcttcttcaaagtttgaatctaccctctgtggttatctctgatattgacttggttttgtgttgttttctggtgaatttgcag-----------

upper sequence: Vv11s0016g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G13920.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttgtggcaaaatttccatcaactgcaatattcttttgacagtatgagtatatgatgcat
 ||||||||| ||   || ||||| |||||| ||||  |||| || ||||||||  | |||||||| |||||||||||||| || ||||||||||| ||||| || |  | |         || | || |   || || | | ||   |   ||  | | ||   || |  | | | |    | | ||            
CTTTGACATGTTGAAGAGGCAGTCTCTTCGTGCTGACAACATCAAGATGTTTGTTCTCGATGAAGCTGATGAAATGCTCTCCCGTGGTTTCAAGGACCAGgt-atgcaaatatttc----tcagtgtt-tcaattccattctcgttatagt-ttaacttgaatctcactggtttctgggttttttcag------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110384191|gb|EC948612.1|EC948612
EST:     TTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71889919|gb|DT038974.1|DT038974
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110392445|gb|EC957871.1|EC957871
EST:     TTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110702274|gb|EE080798.1|EE080798
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|30301294|gb|CB978088.1|CB978088
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71887390|gb|DT036445.1|DT036445
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110723538|gb|EE100968.1|EE100968
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71885808|gb|DT034863.1|DT034863
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71886699|gb|DT035754.1|DT035754
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|34549848|gb|CF518080.1|CF518080
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71888869|gb|DT037924.1|DT037924
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110370912|gb|EC934525.1|EC934525
EST:     TTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71887826|gb|DT036881.1|DT036881
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71886050|gb|DT035105.1|DT035105
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|30138064|gb|CB923402.1|CB923402
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110720401|gb|EE096301.1|EE096301
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|30132358|gb|CB917697.1|CB917697
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|33406752|gb|CF212379.1|CF212379
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110718128|gb|EE094609.1|EE094609
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71879323|gb|DT028378.1|DT028378
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|27583657|gb|CB006352.1|CB006352
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|27581953|gb|CB004648.1|CB004648
EST:     GGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: GGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71869531|gb|DT018586.1|DT018586
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71872121|gb|DT021176.1|DT021176
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71887455|gb|DT036510.1|DT036510
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110696480|gb|EE072635.1|EE072635
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|30134858|gb|CB920196.1|CB920196
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110718319|gb|EE095016.1|EE095016
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110712119|gb|EE089376.1|EE089376
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|71882859|gb|DT031914.1|DT031914
EST:     TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC
EST: gi|110696050|gb|EE074763.1|EE074763
EST:     TTGTGTTGGATGAAGCAAATGAAATGCTCTCTCGAGGTTTCAAGGATCAG                         ATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGGTC
genomic: TTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattctta ... ttccttgcagATCTATGATATTTTCCAACTCCTGCCATCAAAAGTTCAAGTTGGAGTGTTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTTGACATGCTGCGAAGACAGTCCCTTCGTCCTGATTACATTAAAATGTTTGTGTTGGATGAAGCAGATGAAATGCTCTCTCGAGGTTTCAAGGATCAGgtcattcttaaaccctaaatccattcttattgttttcacttttgtggcaaaatttccatcaactgcaatattcttttgacagtatgagtatatgatgcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcaaaa